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dfguan
/
purge_dups
haplotypic duplication identification tool
MIT License
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Meet error:"normal: No such queue. Job not submitted."
#151
DryadDataDiver
opened
1 week ago
0
Detailed explanation of the purge_dups arguments
#150
melop
opened
2 weeks ago
0
purge_dups 1.2.6 container - requesting dependencies version information
#149
secabhk001
opened
1 month ago
1
Version 1.2.6 not reflecting in the latest release
#148
jayramr
opened
1 month ago
0
Having issues setting the manual cut off
#147
ericgonzalezs
opened
4 months ago
1
ERROR: run_busco2 failed, return code: 127
#146
rmormando
opened
4 months ago
0
get two sets of haplotype genomes by purge_dups
#145
gdmdxl
opened
4 months ago
0
minimap2 with the -t option.
#144
ericgonzalezs
opened
5 months ago
0
Input files needed to try out the installation!
#143
qmpotential
opened
5 months ago
0
purge_dups with haploid genomes
#142
ramiroricardo
opened
5 months ago
2
Output file description
#141
tallnuttrbgv
opened
6 months ago
0
"Can't locate autouse.pm in @INC"
#140
KyhlAustin
closed
6 months ago
0
Command split_fa failed return code: 2
#139
kdarragh1994
opened
6 months ago
0
pbcstat invalid pointer
#138
kgun12
opened
7 months ago
5
Error in `pbcstat'
#137
YanCheer
opened
9 months ago
1
run_kmc needs adaption
#136
jowodo
opened
9 months ago
0
Probable error with parsing of the parameter "oe"
#135
shelkmike
opened
10 months ago
0
free(): invalid size in calcuts
#134
shehongbing
closed
11 months ago
2
problem with final results (hist_plot strange)
#133
pguenzi-tiberi
opened
12 months ago
0
PBS job scheduler not supported
#132
Larysha
closed
10 months ago
0
Segmentation fault with calcults
#131
AnezkaKar
closed
1 year ago
1
The "File not found CMD" error in running run_purge_dups.py
#130
nozabey
opened
1 year ago
4
Good looking cutoffs, but almost no actual purging or change in BUSCO
#129
igwill
opened
1 year ago
0
Add documentation in README on how to manually set coverage cutoffs
#128
bricoletc
closed
9 months ago
0
Minimap error out but command runs fine in terminal
#127
christopher-holt
opened
1 year ago
0
Minimap2 error
#126
r-poloni
closed
1 year ago
3
23bp 'N' base in purged.fa
#125
lilinzhou
opened
1 year ago
0
set up manually cutoffs
#124
17863952296
opened
1 year ago
1
set cutoffs
#123
SC-Duan
closed
1 year ago
3
minimap2 step is too slow.
#122
SC-Duan
closed
2 years ago
3
segmentation fault
#121
diego-rt
opened
2 years ago
2
Purge_dups cuttofs on a scaffolded genome
#120
shailij246
opened
2 years ago
1
run_busco2 failed return code:127
#119
olechnwin
opened
2 years ago
5
Running purge_dups from bioconda
#118
fgvieira
closed
1 year ago
2
less effective
#117
naturalstay
opened
2 years ago
0
Duplicates cannot be completely removed
#116
niconm89
opened
2 years ago
0
Can I merge draft genome from different assembler?
#115
piroonj
opened
2 years ago
1
Fix an overflow bug for coverage histogram with >4G bases
#114
c-zhou
closed
2 years ago
0
Need to update or clarify minimap preset for hifi
#113
Astahlke
opened
2 years ago
1
bug for the python script + ask precision if purge_dups run without -c and -T
#112
ArthurPERE
opened
2 years ago
1
Hope for some suggestions for cutoffs
#111
Neo-xbx-00
opened
2 years ago
2
haplotype resolved assembly
#110
m-jahani
opened
2 years ago
2
Hist_plot.py not working
#109
kcl58759
opened
2 years ago
4
Keep dovetail-overlapped haplotigs not purged
#108
ItokawaK
opened
2 years ago
3
Spid issue
#107
kcl58759
opened
2 years ago
1
Optimizing parameters for better purge results
#106
genmor
opened
2 years ago
0
Purge_dups weird graph
#105
B10inform
opened
2 years ago
0
The Purge_dups step failed to produce results
#104
qianqianqian0717
opened
2 years ago
0
Purge_dups not purging?
#103
Harper75
opened
2 years ago
2
BUSCO declined
#102
cherrie-g
closed
2 years ago
1
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