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Hi!
I want to reconstruct a HPRC graph with HG002, and using the command `cactus-pangenome ./js-grch38 ./hprc-v1.1-mc.seqfile --outName hprc-v1.1-mc-grch38 --outDir hprc-v1.1-mc-grch38 --reference GR…
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I created a pangenome graph using pggb, resulting in gfa and og files. I now wish to perform some mappings to the graph and have a few questions:
1. From the pggb documentation I understand that the …
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**1. What were you trying to do?**
I am trying to generate vg node IDs using the vg id command. I am using the .vg files generated by using vg construct in this [link](https://github.com/vgteam/v…
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As mentioned in #149 I get a segmentation fault on branch `walks`, which I don't get on branch `dev` with my Macbook Pro. Example GFA file I obtained from the Minigraph-Cactus pipeline can be found he…
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Hi
I thought I better create a new issue.
I'm getting time out errors on all my requests from displaying all paths in my graph (to display paths in the paths drop-down menu) to running vg chunk.…
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Hi,
I'm using cactus-minigraph following the workflows of pangenome: https://github.com/ComparativeGenomicsToolkit/cactus/blob/master/doc/pangenome.md
The single reference haplotype is about 800M…
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Add panphlan modules & subworkflow to pipeline
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I'm having a problem when I run rarefaction, it never finishes, it stays at 2679/2680.
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Just wonder if MicrobeAnnotator can be combined with results from pangenmoe pipeline?
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Hi
I've just ran a cactus-blast job, based on the cactus-prepare output, using the following command:
```
cactus-blast /cactus/jobStore /data/pangenome_cactus/steps-output/pangenome_guidetree.t…