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ComparativeGenomicsToolkit
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cactus
Official home of genome aligner based upon notion of Cactus graphs
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Merge VCF records at the same position together after bcftools norm left shifts them
#1536
glennhickey
opened
10 hours ago
0
update to patched vcfwave; let it work with multiallelics
#1535
glennhickey
closed
10 hours ago
0
include downloadVCFWave script in binary release
#1534
glennhickey
closed
15 hours ago
0
Does input.fa need to be masked by repeatmasker?
#1533
GooLey1025
closed
2 days ago
1
Prep release v2.9.3
#1532
glennhickey
closed
3 days ago
0
High UID/GID in Cactus Docker Image Causes Failure with Rootless Docker
#1531
Wabanero
opened
3 days ago
1
add vcfwave installation as option to BIN-INSTALL instructions
#1530
glennhickey
closed
3 days ago
0
Add checks for invalid sequence characters when writing temporary FASTA files
#1529
glennhickey
closed
3 days ago
0
Error in filter-paf-deletion with the command 'vg convert' in minigraph-cactus pipeline
#1528
GooLey1025
opened
4 days ago
3
Cactus-pangenome
#1527
omakias
closed
2 days ago
3
Update to patched mafTools
#1526
glennhickey
closed
3 days ago
0
Crash after weeks with errors about fastas with bad headers and empty fasta sequences
#1525
mtvector
opened
6 days ago
6
tighten disk usage estimate for tile_alignments
#1524
glennhickey
closed
6 days ago
0
cactus vs multiz
#1523
evgenyleushkin
opened
1 week ago
1
cactus-hal2maf issue at taffy norm ?
#1522
jeramiahsmith
closed
3 days ago
8
hal to multiple sequence fasta alignment
#1521
dylandebaun
opened
1 week ago
1
Question about gap deletions, gap ins and gap dups
#1520
lsoler-clavel
opened
1 week ago
1
cactus-hal2chains keep the best match
#1519
lyt57
opened
2 weeks ago
2
apply local TMPDIR redirect to all singularity commands
#1518
glennhickey
closed
2 weeks ago
0
set bcftools sort tempdir
#1517
glennhickey
closed
2 weeks ago
0
error with mutifurcation
#1516
matdechiara
closed
2 weeks ago
1
make --maxLen default in cactus-align consistent with cactus-pangenome
#1515
glennhickey
closed
2 weeks ago
0
Sort flowers by total-base-length instead of cap-number for bar/ref
#1514
glennhickey
closed
2 weeks ago
0
update to latest vcflib
#1513
glennhickey
closed
2 weeks ago
2
Minimal configuration for 100 genomes mammal size
#1512
fgualdr
opened
3 weeks ago
4
[experimental] option to estimate alignment score parameters from input pangenome data
#1511
glennhickey
closed
1 week ago
0
Retrieving Regions from Alignment
#1510
Tinydxy
closed
3 weeks ago
1
Only use abPOA's progressive mode if input lengths all (about) the same
#1509
glennhickey
closed
3 weeks ago
0
Question about pangenome building in species with high level of large translocations
#1508
GabrieleRigano99
opened
4 weeks ago
2
Small hacks to maybe avoid potential pangenome race condition
#1507
glennhickey
closed
3 weeks ago
0
switch to patched vg to fix paths -n
#1506
glennhickey
closed
4 weeks ago
0
exit_status 120
#1505
minglibio
closed
2 weeks ago
1
slurm erro
#1504
jwli-code
opened
1 month ago
1
update odgi to latest release v0.9.0
#1503
glennhickey
closed
1 month ago
0
Inquiry Regarding Minigraph-Cactus v2.9.1 Pipeline for Rare Genetic Disease Analysis
#1502
jinhua2024
closed
1 month ago
0
prep release v2.9.2
#1501
glennhickey
closed
1 month ago
0
add --collapse to yeast test
#1500
glennhickey
closed
1 month ago
0
unable to write rGFA tags for path
#1499
jinhua2024
closed
1 month ago
3
fix (merge?) bug in collapse logic
#1498
glennhickey
closed
1 month ago
0
use exact disk estaimte for merge_alignments job
#1497
glennhickey
closed
1 month ago
0
Identifying orthologous sites
#1496
Marh32
opened
1 month ago
4
How does cactus run on multiple nodes in a cluster？
#1495
jwli-code
closed
1 month ago
1
Job used more disk than requested.
#1494
jeramiahsmith
opened
1 month ago
4
Duplicated variants in a pangenome VCF
#1493
Han-Cao
opened
1 month ago
10
v2.8.1: diploid input, haploid output
#1492
dmjask
opened
1 month ago
3
Refactor VCF export
#1491
glennhickey
closed
3 hours ago
0
VCF output for different "--filter N" option
#1490
shin0727
opened
1 month ago
1
update abpoa to v1.5.3
#1489
glennhickey
closed
1 month ago
0
prep release 2.9.1
#1488
glennhickey
closed
1 month ago
0
Can I use cactus to compare multiple Poaceae plant genomes?
#1487
liuyt57
opened
1 month ago
2
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