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ComparativeGenomicsToolkit
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cactus
Official home of genome aligner based upon notion of Cactus graphs
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raise RuntimeError("Failed to parse newick tree: %s" % RuntimeError: Failed to parse newick tree
#1375
Cholineborzoi
opened
1 month ago
4
Can Cactus be applied to plant genomes?
#1374
Galaxy-228
opened
1 month ago
1
pangenome.vcf.gz seems to report SV coordinates relative to the END, not start, of the variant
#1373
adadiehl
closed
1 month ago
2
Contigs dropped silently from output
#1372
MarionPerrier
opened
2 months ago
1
fix cactus-preprocess --maskMode option
#1371
glennhickey
closed
1 month ago
0
toil bug in preprocess stage?
#1370
AryehMiller
closed
2 months ago
4
WGS bigger than phased reference genome on ODGI Viz plot. (How to use phased and unphased WGS for pangenome with Minigraph-cactus?
#1369
Donandrade
opened
2 months ago
4
!!!!run failure after 2 weeks
#1368
song984888
opened
2 months ago
2
how to add a new species as outgroup
#1367
Marh32
opened
2 months ago
2
cactus-hal2maf takes a long time to run
#1366
Sanat-Mishra
opened
2 months ago
5
Move maxRefNFrac and minLines filters from hal2maf to maf2bigmaf
#1365
glennhickey
closed
2 months ago
0
Try to make illegal instruction message more precise
#1364
glennhickey
closed
2 months ago
0
Division by zero error when MAPQ is set to 1
#1363
MarionPerrier
closed
2 months ago
1
hal2maf don't contain all the base of reference genome
#1362
chun-he-316
closed
2 months ago
4
Job 'cactus_cons' kind-cactus_cons/instance-06ssc_rv v12 is completely failed
#1361
song984888
opened
2 months ago
1
cactus-hal2maf installation issue
#1360
hopehealey
opened
2 months ago
1
Rename intermediate minigraph fasta file
#1359
glennhickey
closed
2 months ago
0
about reference-free questions
#1358
HFzzzzzzz
opened
2 months ago
1
Minigraph-Cactus: Details on the .gfa.fa.gz output file
#1357
VLoegler
closed
2 months ago
1
add vcfwave and bcftools norm
#1356
glennhickey
closed
2 months ago
0
hal2maf Error: PermissionError: [Errno 13] Permission denied: 'halStats'
#1355
tinaveit
opened
2 months ago
3
gaf2unstable - empty GAF records?
#1354
askleppe
opened
2 months ago
1
diploid coverage drop-off
#1353
glennhickey
opened
2 months ago
0
turn on --doubleMem by default for clusters
#1352
glennhickey
closed
4 weeks ago
1
Fix cactus-hal2maf --binariesMode docker
#1351
glennhickey
closed
2 months ago
0
--restart did not fix failed job
#1350
scintilla9
closed
2 months ago
2
hal2maf
#1349
ferninfm
closed
2 months ago
1
AVX2 support
#1348
weiranmmm
closed
2 months ago
2
update vg to v1.56.0
#1347
glennhickey
closed
2 months ago
0
update abpoa to latest master commit
#1346
glennhickey
closed
2 months ago
0
update odgi to v0.8.6
#1345
glennhickey
closed
2 months ago
0
Boot job memory for taffy coverage and hgLoadMafSummary
#1344
glennhickey
closed
2 months ago
0
v2.8.1 GPU failture! help
#1343
song984888
closed
2 months ago
1
Use bigChain.as from kent src
#1342
glennhickey
closed
2 months ago
0
Fix float memory requirement
#1341
glennhickey
closed
2 months ago
0
prep release v2.8.1
#1340
glennhickey
closed
2 months ago
0
deprecated cactus-maf2bigmaf --chromSizes
#1339
glennhickey
closed
2 months ago
0
Revert back to mafRowOrderer from taffy sort
#1338
glennhickey
closed
2 months ago
0
On species tree and branch lengths
#1337
diego-rt
opened
2 months ago
1
add range support for cactus-hal2maf
#1336
glennhickey
closed
2 months ago
1
cactus-hal2maf on specific genomic intervals
#1335
cjmcmanus
closed
2 months ago
0
cactus-hal2chains makeover
#1334
glennhickey
closed
2 months ago
0
Job 'RedMaskJob' kind-PreprocessSequence/instance-rmupfpbr v8 is completely failed
#1333
song984888
closed
2 months ago
3
cactus-maf2bigmaf script fails with 'NoneType' error
#1332
crinfante
closed
2 months ago
3
Trying to run cactus-hal2maf with --refGenome Anc0
#1331
BlackSlipper
closed
3 months ago
2
update taffy
#1330
glennhickey
closed
2 months ago
0
Question about ancestral genome length too short
#1329
qiqizhang01
closed
2 months ago
2
Fix bug where RED prerpocessing crashes if input 100% unmasked
#1328
glennhickey
closed
3 months ago
0
Fail to run Cactus after updating to 2.8.0
#1327
BitaoQiu
closed
3 months ago
2
"Cycle detected" error
#1326
rishipurohit
opened
3 months ago
1
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