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ComparativeGenomicsToolkit
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cactus
Official home of genome aligner based upon notion of Cactus graphs
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unrecognized arguments: --bigChain
#1443
AurelieHintermann
closed
4 months ago
1
update abpoa to latest release: v1.5.2
#1442
glennhickey
closed
4 months ago
0
disable outgroup computation for pangenomes
#1441
glennhickey
closed
4 months ago
0
Introduce seqfile technology to cactus_consolidated
#1440
glennhickey
closed
4 months ago
1
Obtain node PAV, ID and fasta.
#1439
caonetto
closed
4 months ago
0
Divide minigraph construction into chunks
#1438
glennhickey
closed
4 months ago
0
Help parameterizing seqfile
#1437
desmodus1984
opened
4 months ago
1
update hal to patch pangenome input number limit
#1436
glennhickey
closed
4 months ago
0
Split multiallelic sites and drop AT fields before running vcfwave
#1435
glennhickey
closed
4 months ago
0
update vg to v1.58.0
#1434
glennhickey
closed
4 months ago
0
fix typo in pangenome doc
#1433
glennhickey
closed
4 months ago
0
The sentence below, should`cactus-graphmap-join`be`cactus-pangenome`?
#1432
qizhengyang2017
closed
4 months ago
0
How compare mapping performance using vg-giraffe between pangenome and genomes used in pangenome construction
#1431
isaacambrogetti
opened
4 months ago
1
Can this graph coverage be considered normal or good?
#1430
peanut-nu
opened
4 months ago
2
MC process evolution tree file problem
#1429
jwli-code
closed
4 months ago
2
I want to know how cactus-pangenome adds tree file relationships.
#1428
jwli-code
closed
4 months ago
1
run on the grid_engine cluster
#1426
minglibio
closed
4 months ago
1
Don't name-munge underscores in maf/taf processing
#1425
glennhickey
closed
4 months ago
0
Use smaller distance index for --hapl, and decouple from --giraffe
#1424
glennhickey
closed
4 months ago
0
hal2fasta coordinates not matching with input
#1423
danielagarciacobos4
opened
5 months ago
1
prep release 2.8.4
#1422
glennhickey
closed
5 months ago
0
update vcfbub to v0.1.1
#1421
glennhickey
closed
5 months ago
0
Long Running Time and High Memory Consumption for `paffy` in `cactus-blast`
#1420
thiagogenez
opened
5 months ago
8
Multiple fasta input, single sample in vcf
#1419
dmjask
closed
1 month ago
2
create phylogenetic tree with the alignment maf format
#1418
dandanWang2019
opened
5 months ago
8
use bcftools view to sanity check every vcf
#1417
glennhickey
closed
5 months ago
0
Cactus-pangenome fails at make_vcf step only on real data
#1416
amsession
closed
5 months ago
3
Large variation in run time and data recovery of cactus-hal2maf when switching reference genomes
#1415
emistasis
opened
5 months ago
1
Bump gpu docker to ubuntu 22 as Toil 7.0 seems to want Python version > 3.8
#1414
glennhickey
closed
5 months ago
1
maybe the "path" do not exist in the gfa ?
#1413
peanut-nu
closed
5 months ago
0
prep release 2.8.3
#1412
glennhickey
closed
5 months ago
0
How to find halLiftover from cactus install?
#1411
hopehealey
closed
5 months ago
1
fix: handle scientific notation in awk output by converting to float …
#1410
thiagogenez
closed
5 months ago
1
handle scientific notation awk result
#1409
glennhickey
closed
5 months ago
0
ValueError in redMasking.py due to invalid literal for int() with base 10
#1408
thiagogenez
closed
5 months ago
2
vcf location problem in Minigraph catus
#1407
jwli-code
opened
5 months ago
1
raise RuntimeError("{}Command {} exited {}: {}".format(sigill_msg, call, process.returncode, out))
#1406
1321425744zy
opened
5 months ago
2
Good practice for Reference-Mapped Short Read Genomes?
#1405
dylandebaun
opened
5 months ago
2
Toilify vcfwave
#1404
glennhickey
closed
5 months ago
0
catch errors in vcf-bubwave script
#1403
glennhickey
closed
5 months ago
0
vcf-bubwave does not raise error when it fails
#1402
Han-Cao
opened
5 months ago
19
Fixed typo in cactus_maf2bigmaf.py
#1401
ofirr
closed
5 months ago
1
Documentation updates
#1400
glennhickey
closed
5 months ago
0
Only trim outgroups if there are any
#1399
glennhickey
closed
5 months ago
1
system-specified memory limit or not？
#1398
peanut-nu
closed
5 months ago
4
Question about final gfa files from Minigraph-Cactus
#1397
SimonaSecomandi
opened
5 months ago
1
Adjusting config.xml to allow multifurcations
#1396
emistasis
closed
6 months ago
4
RuntimeError: can't start new thread
#1395
scintilla9
closed
6 months ago
9
update to toil 7.0
#1394
glennhickey
closed
6 months ago
0
update vg to v1.57.0
#1393
glennhickey
closed
6 months ago
0
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