-
In `skbio/stats`, the function `subsample_counts` and it's underlying Cython function `_subsample_counts_without_replacement` throw the following errors when run on Windows systems:
````
=========…
-
Hello,
I'm currently analyzing a substantial dataset comprising 11,743 genomes of different _Enterococcus_ species, including over 20 outgroup genomes from the same family and order. because of the…
-
When importing (unrooted) phylogenies, the current phyloseq tutorials and/or functions implement a very ad hoc rooting of the tree, placing the root at a randomly picked tip, like so:
``` R
tree.root…
-
Hello,
I'm looking to create a custom database to run in Phylosift and keep getting error messages when trying to build the database using The Monkey. I can index the created database, but the taxa …
-
This continues from BioJulia/Bio.jl issue number 263
-
Whales tree now fails ultrametric test in ape. Pretty sure this didn't happen previously. It's definitely a tiny numerical issue and easily fixed, but we should fix tree by adding trivial branch lengt…
-
Dear,
I am very interest in using your tool for my project. I'm working on influenza reads that were sequenced with Illumina MiSeq. I was able to extract quasispecies with LoFreq, however LoFreq do…
-
Finishing the series #22, #23, #26, #27, #28, #29, #31, #32, #33 cc @connorjburgin.
# Rodentia: Supramyomorpha
Straightforward accepted changes
* New mergers
* _Scarturus toussi_ -> _S. vi…
-
Some files created by ExportFromIndexStream contain inconsistent field counts compared to the header row:
```
Line and header sizes were different: expected 661, found 652
headers=["Record ID"…
-
Here is our proposal for a CTV on Archaeological Science. We have organised the proposal into the sections requested in the instructions (scope, packages, overlap, maintainers):
_Scope_:
Archa…