gjospin PhyloSift issues

gjospin / PhyloSift

Phylogenetic and taxonomic analysis for genomes and metagenomes

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issues

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Use of uninitialized value $timestamp in scalar chomp at /data/software//PhyloSift/bin/../lib/Phylosift/Utilities.pm line 365, <$FH> line 1

#507 xieyg5 opened 2 years ago
0
broken link to download?

#506 ltom6 opened 4 years ago
1
hmmalign error

#505 kyselad opened 4 years ago
1
Link broken for download

#504 jolespin opened 4 years ago
2
[Feature Request] Please make this available via conda

#503 jolespin opened 4 years ago
0
Failed to open covariance model save file

#502 Oakley-Lab opened 4 years ago
1
error with phylosift search

#501 ucassee opened 4 years ago
13
Use of uninitialized value $timestamp in scalar chomp at..

#500 ganiatgithub opened 5 years ago
1
running aborted

#499 bonniethesheng opened 5 years ago
1
markers.rep not found

#498 Ians14 closed 5 years ago
0
NCBI taxonomy data not found and unable to connect to update server

#497 bonniethesheng closed 5 years ago
4
problem indexing, process running without any progress

#496 novitch opened 5 years ago
1
Problem indexing , can't find repository for most of markers

#495 novitch closed 5 years ago
2
Error: requested HMM banded DP mx of 3903.86 Mb > 2500.00 Mb limit.

#494 itiago opened 5 years ago
0
pplacer not found

#493 AvdReis opened 5 years ago
3
The download URL may be disabled

#492 bioinformaticspcj opened 6 years ago
8
Dead Download Link

#491 jesipr closed 6 years ago
1
Error running Phylosift

#490 nhudag opened 6 years ago
6
Running phylosift

#489 nhudag closed 6 years ago
0
error using phylosift... rm: cannot remove ... No such file or directory

#488 itiago closed 5 years ago
0
PhyloSift error running (Can't locate App/Cmd/Setup.pm in @INC)

#487 ghost opened 6 years ago
4
Marker gene webpage down?

#486 evensannesriiser closed 6 years ago
1
Grinder.pm missing...

#485 jamesabbott opened 6 years ago
1
Problems understanding summary results

#484 itiago opened 7 years ago
0
Gor this Error: requested HMM banded DP mx of 5030.12 Mb > 2500.00 Mb limit. Increase limit with --mxsize or tau with --tau.

#483 itiago opened 7 years ago
0
--extended db

#482 rjsorr opened 7 years ago
2
Marker files not readable

#481 gjospin opened 7 years ago
0
--coverage option formatting

#480 ursky opened 7 years ago
0
Can't locate loadable object for module Digest::MD5

#479 matiasirazoqui opened 8 years ago
0
phylosift infinite run with tutorial files?

#478 Sanrrone closed 8 years ago
1
cmalign seg fault

#477 gjospin opened 8 years ago
0
unzipping markers.gz

#476 ryanjw opened 8 years ago
0
Trouble to run phylosift on server

#475 dong5600 opened 8 years ago
7
Bug fix for MarkerBuild.pm

#474 scwatts closed 8 years ago
0
How to obtain confidence values concatenated tree?

#473 driscolc opened 8 years ago
0
error when running tutorial files

#472 harrysunny998 opened 8 years ago
0
Misclassifications

#471 rohansachdeva opened 8 years ago
0
Analysis

#470 dee31n opened 9 years ago
1
Alignment file parse error

#469 ghost closed 9 years ago
1
build_marker taxids invalid

#468 KevinAMeyer opened 9 years ago
2
Error: requested HMM banded DP mx > limit. But nowhere to add --mxsize according to mannual

#467 yoyohashao opened 9 years ago
0
rm: cannot remove blastDir/*.aa.1*

#466 xapple opened 9 years ago
5
Sequence IDs with tab characters not handled

#465 koadman closed 9 years ago
1
Input Sequence IDs lost in all mode

#464 augustlongino opened 9 years ago
10
Increase limit with --mxsize or tau with --tau

#463 javiercnav opened 9 years ago
1
Incorrect grammar in error message

#462 gjospin opened 9 years ago
0
db_update --config uses default phylosiftrc

#461 gjospin opened 10 years ago
0
Broken concatenation when multiple hits to dngngnwu markers

#460 gjospin opened 10 years ago
0
improve configurability for pplacer mmap usage

#459 koadman opened 10 years ago
0
print version to screen & run_info.txt

#458 koadman opened 10 years ago
0