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Can you please suggest what values should be manually assigned for resolving the following error?
> [17/10/2017 11:26:33] Sorting splice-graphs by read count
> [17/10/2017 11:26:33] Finished s…
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Hello,
I have successfully run the example datas, but suffered failure when using my own data with the same parameters. Could you help me to fix it?
Here is my commend line:
```
python /work/bio…
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**Description of the task:**
@hannes-ucsc pointed out that these 4 datasets have at least 1 specimen which was the sequencing input.
https://data.humancellatlas.org/explore/projects/6c040a93…
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First weekly progress update of my project (description of my project plan)
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Hi there,
I browsed your interesting [paper](https://doi.org/10.1093/nar/gkad158) (that isnt mentioned in the README) and was intrigued by the speed improvement while promising a similar performanc…
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Some filters we should probably have (going by artifacts I've observed in real data)
- Strand bias
- Variants reads mostly start or end at the same place
- Variants toward the end of homopolymers (per…
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Rather than truly random synthesis, there are semi-random barcode libraries that adhere to a given structure (e.g. [clonTracer](https://www.addgene.org/pooled-library/clontracer/)). In such cases, the…
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Before we start, let us talk about one experimental design as an example to highlight what metadata we might need to annotate the files of this experiment . We have a sequencing experiment to test RNA…
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When I execute TenSQR multiple times with the same config file on the same data, I obtain differing results. The files produced by `ExtractMatrix` are identical, but the number of estimated strains di…
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Hi Anna and co-authors,
Thanks for the wonderful work on this pipeline - it's really a great resource for the whole community.
**Q/request**: I am interested in using dadasnake for doing paramet…