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a-h-b
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dadasnake
Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake
GNU General Public License v3.0
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reverse complement code is wrong in `cutadapt.smk` and `cutadapt.single.smk` (solution provided)
#40
ppreshant
opened
3 weeks ago
0
16S run error
#39
sanche27
opened
1 month ago
3
Question on representative sequences
#38
juismo
closed
10 months ago
2
Error in rule picrust2
#37
bheimbu
closed
11 months ago
3
ITSxpress support
#36
eperezv
opened
1 year ago
1
NCBI BLAST nt database configuration with dadasnake: Example config.yaml files for use with BLAST
#35
jonwhit
opened
1 year ago
2
Failed "optional test run" - Step 7 of Install
#34
jonwhit
closed
1 year ago
4
WorkflowError: File reporting/primerNumbers_perLibrary.tsv marked for report but does not exist.
#33
tboonf
closed
1 year ago
7
Devel11
#32
a-h-b
closed
1 year ago
0
Readme for 0.11
#31
a-h-b
closed
1 year ago
0
Initializing dada2_env.yml failed
#30
Pawelco2
closed
1 year ago
1
install instructions using cluster snakemake module
#29
bishopia
closed
1 year ago
1
Runtime of 120 hours in some rules
#28
velma-te-a
closed
1 year ago
1
error: "Could not create conda environment from ... "
#27
gljessen
closed
2 years ago
6
mothur database issue
#26
splaisan
closed
1 year ago
2
complaining about GB locale
#25
splaisan
closed
2 years ago
10
Visualize DAG
#24
thierryjanssens
closed
2 years ago
5
Multiple cores when using option -l
#23
thierryjanssens
closed
2 years ago
1
Nanopore data
#22
thierryjanssens
closed
1 year ago
7
multiple primer sets
#21
a-h-b
opened
2 years ago
3
Feature request / general question re: parameter sweeps for DADA2
#20
jcmcnch
opened
2 years ago
1
submitting to cluster not working
#19
vmkhot
closed
2 years ago
6
Test run fail
#18
liaochen1988
opened
2 years ago
2
VARIABLE_CONFIG?
#17
marwa38
closed
2 years ago
2
Node selection Slurm with dadasnake wrapper
#16
Fred-White94
closed
2 years ago
16
Workflow error
#15
Sbsten
closed
2 years ago
24
Devel9
#14
a-h-b
closed
3 years ago
0
Slurm Latency Issues - how to add --latency-wait into config
#13
Fred-White94
closed
3 years ago
2
Setup and cutadapt cyclic dependency issue
#12
Fred-White94
closed
3 years ago
1
Multiple primers per sample
#11
Fred-White94
closed
3 years ago
8
snakemake: error: argument --configfile: expected one argument
#10
anilchauhanhp9
closed
3 years ago
24
use snakemake wrappers and/or contribute to Snakemake workflows
#9
dlaehnemann
opened
3 years ago
3
dada_dadaReads.runpool.R fix
#8
vmikk
closed
3 years ago
1
Within-run pooling
#7
vmikk
closed
3 years ago
4
Rule `dada_dadaSingle` works only in a single-thread
#6
vmikk
closed
3 years ago
5
pygments.util.ClassNotFound: no lexer for alias None found - bug or documention
#5
osilander
closed
3 years ago
4
catch error in blast rule if no sequences are left after classification
#4
a-h-b
closed
4 years ago
0
make blast for all OTUs an option
#3
a-h-b
closed
4 years ago
0
Add ITSx result to table if taxonomy isn't based on it.
#2
a-h-b
closed
4 years ago
0
add rule to make blast DBs
#1
a-h-b
closed
4 years ago
0