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Proteomics:
Goal: Wrap up proteomics methods
- [x] Take data cleaning analysis w/ preprocess step that separates out somascan and TMT, see effect of domain adaptation before combining vs combined @ak…
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Hello,
I'm impressed what MaxFuse can do and interested in exploring it's capabilities in integrating multi-omics datasets, particularly in the context of spatial proteomics and transcriptomics lik…
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Webapp
- [x] Fix S3 upload - March 13th for PR @akotlar
- [x] Fix search cards to show all data - March 13th for PR @akotlar
- [x] Hide settings wheel in queued file list (it is not currently enabl…
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# Design
## Additions
For Assay
MUST Use
mCT-seq [EFO:0030060]
"cell" or "nucleus"
MERFISH [EFO:0008992]
"na"
…
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I propose a new UBKG model to address three separate requests.
# Requests
1. The UBKG should be the source of truth for the assay metadata currently managed in the value object of the soft assay t…
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Dear authors, I am now using ssgsea method in gsva to evaluate the samples' enrichment score in a dataset, but the result is all NA, I would be very grateful if you could give me some guidance on that…
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Hello,
I noticed that you provided the data from the scPROTEIN paper in this repository. But they seem to be centralized data. Can you please also provide non-centralized data?
Thanks!
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### Due date for Sprint 11 - May 16th.
### General
- [x] Improve installation instructions so that the annotator can be installed without issue on Amazon Linux 2023 - @dlin30 - 2024/05/08
### Prote…
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|BCO ID | Dataset Name| Creator Name|Notes|
|----|----|----|----|
|GLY_000965|chicken_proteoform_glycosylation_sites_uniprotkb.csv|Urnisha|
|GLY_000966|chicken_protein_ncbi_linkouts.csv|Urnisha|
|…
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When I run `attachment::att_amend_desc()` , it now removes the lines corresponding to Bioconductor packages in the Remotes field.
Before running it:
```
Remotes:
bioc::frma,
bioc::gcrma…