Nesvilab FragPipe issues

Nesvilab / FragPipe

A cross-platform proteomics data analysis suite

http://fragpipe.nesvilab.org

Other

208 stars 38 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Label 131 does not have annotation: TMT10 with valid annotations.txt

#1899 wyu opened 54 minutes ago
3
Percolator: Convert to pepxml: cannot find output_report_top_N parameter

#1898 bingnanzhao opened 22 hours ago
6
java.io.IOException: There is not enough space on the disk

#1897 IliyanaKan closed 1 day ago
4
Bioconda package for fragpipe last version?

#1896 rolivella opened 3 days ago
2
Isobaric label annotation

#1895 cutleraging opened 3 days ago
2
non specific peptidome (GOOD NEWS)

#1894 kwynne71 closed 4 days ago
3
Threads and midification

#1893 Li5459000 closed 3 days ago
3
Questions about running Fragpipe in headless mode on Linux (DIA-NN executable file and location of the Python directory)

#1892 RobAlbn closed 5 days ago
2
Crash in open search, while closed search works fine.

#1891 Dmorgen closed 4 days ago
4
Hyperplexing setup

#1890 cutleraging closed 2 days ago
7
[question]: Docker image or Dockerfile for MSFragger

#1888 tamuanand closed 5 days ago
4
MSFragger for Histone PTMs?

#1889 fazeliniah closed 2 days ago
5
plexDIA - Propagate information error

#1885 cutleraging closed 4 days ago
1
format for MSFraggerDIA

#1884 wangss3 closed 6 days ago
2
Differences when comparing "combined_protein.tsv" files of searches that were run with Fragpipe 20.0 and Fragpipe 22.0

#1883 RobAlbn closed 1 week ago
2
desthiobiotin modification of lysine

#1882 maohuanyang closed 4 days ago
2
FDR issue with search against human + 23 bacterial database

#1881 JAnu1291 closed 2 days ago
9
Process 'CheckCentroid' finished, exit code: 1 Process returned non-zero exit code, stopping

#1880 talithar-star closed 4 days ago
1
Dimethy labeling

#1878 poorichaya opened 1 week ago
1
Numeric ordering of column in quantitative tables

#1877 mwfoster closed 1 week ago
2
Error on EasyPQP

#1876 LKittinun closed 1 week ago
5
PDV viewer vs TSV file

#1875 tjiangUNM closed 1 week ago
2
MSFragger error: too many peptides were generated, Could not continue. The limit is approximately 2 billion peptides.

#1874 SamueldelaCamaraFuentes closed 1 week ago
1
DIA-NN error: Could not read Thermo RAW file

#1873 cdw0101 closed 1 week ago
3
EasyPQP couldn't import PyOpenMS package

#1872 JM-Bader closed 1 week ago
1
Speed up DIA analysis

#1871 Li5459000 closed 1 week ago
1
Issue with TMT-Integrator for TMTzero with Philosopher

#1870 FehrAaron closed 1 week ago
7
100% FDR not possible?

#1869 07liesin closed 1 week ago
3
EasyPQP couldn't import PyOpenMS package

#1868 tomvaiuw closed 1 week ago
2
license issues with conda env when offline

#1867 eaundhe closed 2 days ago
15
MS2 calibration (new) looks worse than (old)

#1866 candidaorelmex closed 1 week ago
3
plexDIA

#1865 li20041 closed 2 weeks ago
1
No combined_proteins.tsv output file

#1864 larsonlarsoff closed 2 weeks ago
4
PTMShepherd "Exception in thread"

#1863 OLWatUNSW opened 2 weeks ago
3
FragPipe and Heterozygosity

#1862 chad-hyer closed 1 week ago
3
Description for different workflow

#1861 Yonghao-Holden closed 1 week ago
8
DIA_SpecLib_Quant_Phospho_diaPASEF Sitereport

#1860 dh2305 opened 3 weeks ago
17
Crash post search - insufficient memory?

#1859 Dmorgen closed 2 weeks ago
11
How to treat searches with independent FASTA files

#1858 NikolaMonteverde closed 2 weeks ago
2
EasyPQP couldn't import PyOpenMS package

#1857 eunseokim37 closed 3 weeks ago
2
Process 'MSFragger' finished, exit code: 1 Process returned non-zero exit code, stopping

#1856 Hongbo-Jiao closed 3 weeks ago
4
PeptideProphet fails to estimate "perfect “spectras

#1855 molshatzki closed 2 weeks ago
3
stat lib: Don't have that file or directory

#1854 amingson closed 3 weeks ago
4
Process 'Percolator' finished, exit code: 1 - Process returned non-zero exit code, stopping

#1853 pkarousi closed 2 weeks ago
1
A bug in DIA-NN 1.9.2 broke MSBooster

#1852 benqhan opened 3 weeks ago
3
Could not get isolation window info from scan 7557

#1851 aakendra11 closed 3 weeks ago
6
JAVA_HOME is set to an invalid directory

#1850 mdjones closed 3 weeks ago
1
FragPipe is not generating a Spectral Library

#1849 eunseokim37 closed 3 weeks ago
8
Replicates merged

#1848 kreitman closed 3 weeks ago
1
Quick way to find PE

#1847 NikolaMonteverde closed 2 weeks ago
1