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I think it would be useful to support specifying a model without `statsmodels.formulas.api`
### Pandas example
```python
import pandas as pd
import statsmodels.api as sm
import marginaleffects …
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Hi, I was running multiple runs parallelly on multiple GPUs with the same output folder and one of the runs exited with the error below when fixing interface residues.
The runs continued for more t…
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Hi, when i used the read2tree, i meet a question as follows:
Re-loading files: 5997 OGs [02:42, 36.81 OGs/s]
Re-loading references for mapping from folder: 100%|?????| 5/5 [00:00
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Looking at the code base.
https://deepforest.readthedocs.io/en/latest/_modules/deepforest/main.html#deepforest.predict_file
it actually looks like dataset.TreeDataset() is the problem here, beca…
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- [x] fix bug in mapping pipeline:
- [x] reads are lost during mapping
- [x] determine step and fix
- [ ] add check for sufficient file size/read count in mapped BAM
- [x] remove unmapped BAM …
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Hi developer,
Very cool tool!
I was trying to adapter this tool to my data, i installed it and run with my test data.
i got an error like:
```bash
ERROR: unequal read number for read1 (3276…
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### Contributing guidelines
- [X] I have read [CONTRIBUTING.md](https://github.com/echasnovski/mini.nvim/blob/main/CONTRIBUTING.md)
- [X] I have read [CODE_OF_CONDUCT.md](https://github.com/echasnovs…
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See issue #44
From TPP:
> 1. Split the CPRD code tables into valid Read2 codes and terms. Read 2 codes are 5-byte alpha-numeric strings (e.g. 'G33..') and Read2 terms are 2-byte numeric strings …
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Present in nf-core multiqc report:
- fastqc metrics, including GC content
- mapping percentages (bowtie2)
- reads passing filters (cutadapt)
- trimmed sequence lengths (cutadapt)
- unique/multima…
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Hi,
I'm having trouble running one particular instance of Strainberry. If fails after giving me this message:
```
[M::mm_idx_gen::1.093*0.54] collected minimizers
[M::mm_idx_gen::1.184*1.20] s…