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I analyze according to the standard tutorial, but there are always errors. This is my running log. I hope to get your reply Thanks!
pyscenic ctx adj.sample.tsv $f_db_names --annotations_fname motifs-…
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Dear Mini_Ex Team,
First thanks for providing such tool. I am excited to look at the results.
I encounter an issue running your example sample at the run_enricher_motifs step. I am working on an H…
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Hi, this is related to #188 which was closed without a solution. I was using the 10k PBMC multiome dataset from 10x Genomics. I got the same error while running the 'run_scenicplus' step. Your help is…
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I recently completed the updated scenicplus workflow (snakemake version) and realized that the functions to calculate TF expression and region/gene AUC correlations are missing. Is there a function to…
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Hello, thanks for this great tool!
When I run 'runSCENIC_2_createRegulons' with SCENIC version 1.3.0, I got the following error:
scenicOptions
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Hi pySCENIC team,
Thank you for providing a great tool. I am running pyscenic using my original zebrafish data. However, I got an empty file output (reg.csv) from `pyscenic ctx`, which is a ve…
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Hi,
I have installed the latest version of R Scenic and it seems that it only works for feather v1 version but does not work for feather v2 version (for v2 there is error: "The index column 'featur…
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**Describe the bug**
executor > local (7)
[31/6d1912] process > filter [100%] 1 of 1 ✔
[e7/4eb506] process > preprocess [100%] 1 of 1 ✔
[ba/6f6b33] process > pca [100%] …
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Hello everyone,
Amazing job and thank you for providing this tool!
I was trying to apply SCENIC+ onto some some of our data, and while it works without major issues with the new snakemake updat…
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**Describe your question**