issues
search
aertslab
/
SCENIC
SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
http://scenic.aertslab.org
GNU General Public License v3.0
394
stars
94
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Bioconductor version
#459
flde
opened
1 week ago
0
shiny::runApp NOT FOUND
#455
TZUwang
opened
1 month ago
0
No questions here, please! runSCENIC_3_scoreCells :Error in signif(trhAssignment, 3)
#454
ManarHashemTaha
opened
1 month ago
0
Error in file(con, "w") : all connections are in use
#453
TZUwang
opened
2 months ago
2
Installation Error
#451
parkjooyoung99
opened
3 months ago
1
Running GRNBoost as a batch job
#449
MehvesOzel
opened
3 months ago
0
could not find function "AUCell_createViewerApp"
#448
Eunice0519
opened
3 months ago
2
what is the difference between "motifAnnotations" and "motifAnnotations_hgnc_v9" , and what impact will it have on the results?
#447
Chenchen3Chen
opened
3 months ago
0
Could not initialize SCENIC
#446
synatkeamsk
opened
3 months ago
0
Scenic on HPC
#445
Sogand65
opened
4 months ago
1
Details about plot SCENIC results with cytoscape
#443
DiracZhu1998
opened
4 months ago
1
Mis-labelled motifs - SCENIC+
#442
JaanaB1
closed
4 months ago
1
Error Running runGenie3 in R
#441
DomenicoSkyWalker89
closed
4 months ago
1
Error message during running runSCENIC_3_scoreCells()
#439
jiuquzjw
opened
5 months ago
6
run_SCENIC_2_createRegulons(): Warning
#438
btsanketh
opened
5 months ago
0
RSS top eRegulon jaccard heatmap
#436
alirosen
opened
5 months ago
0
Error in running runSCENIC_3_scoreCells() and AUCell_buildRankings() functions.
#434
DiracZhu1998
closed
5 months ago
3
addresses issue 168 by parameterizing checkAnnots rnktype
#432
blaserlab
opened
6 months ago
0
error in plot_eRegulon function for downstream analysis
#431
alirosen
closed
5 months ago
0
Warning in .AUCell_calcAUC(geneSets = geneSets, rankings = rankings, nCores = nCores,
#429
rraky
opened
6 months ago
0
scenicOptions <- runSCENIC_2_createRegulons(scenicOptions, coexMethod=c("top5perTarget")) #** Only for toy run!!
#428
kakaisi
opened
7 months ago
0
runSCENIC_3_scoreCells error
#427
alisyedraza1
opened
7 months ago
0
runSCENIC_3_scoreCells() error
#425
alisyedraza1
opened
7 months ago
3
TF dropout when running runSCENIC_2_createRegulons(scenicOptions)
#424
rmauron
opened
7 months ago
0
No questions here, please!
#423
alisyedraza1
opened
7 months ago
1
Comparison between two SCENIC networks
#419
miguecass
opened
7 months ago
1
exportsForArboreto input matrix log transformed or not
#418
iichelhadi
opened
8 months ago
0
These errors seem to be related to the R version...
#416
jwg054000
opened
8 months ago
0
p-value of regulon activity calculation
#409
wingkyBs
opened
10 months ago
0
Error in matrix(data = 0L, nrow = mat@Dim[1], ncol = mat@Dim[2])
#404
sahanda66
opened
10 months ago
0
Installation issue because of 'arrow' package
#401
abspangler13
opened
11 months ago
0
Error in runSCENIC_3_scoreCells
#400
AritaZ-hang
opened
1 year ago
3
The clustering was not obvious.
#399
CHNLMENG
opened
1 year ago
0
RcisTarget question
#397
zhangjiahao1234
opened
1 year ago
1
Installation error
#396
Jokendo-collab
opened
1 year ago
0
✖ Column `features` doesn't exist.
#394
hemantgujar
opened
1 year ago
2
runSCENIC_3_scoreCells errors: Not enough regulons with at least 10 genes.
#392
sanderslhc
opened
1 year ago
0
Error in setting scenicOptions, what should I do?
#391
liuhy86
opened
1 year ago
0
Error in match.arg(method) : 'arg' must be of length 1 when running runSCENIC_2_createRegulons
#389
trucnguyen89
closed
1 year ago
0
pySCENIC cannot reproduce AUCell + tSNE projection from a tutorial
#388
ninhleba
opened
1 year ago
1
Error in asMethod(object) : Cholmod error 'problem too large' at file ../Core/cholmod_dense.c, line 102 Calls: as.matrix -> as.matrix.Matrix -> as -> asMethod
#385
ekinsnmz
opened
1 year ago
0
reduce number of top regulons per cell type
#383
azwainCC
opened
1 year ago
0
Please reopen "Problem with initializeScenic() #168"
#379
huhayahoo
opened
1 year ago
2
could not find function "calcRSS"
#374
chenx9
opened
1 year ago
7
How to apply SCENIC to zebrafish except for human,mouse and fly at the initializeScenic step?
#371
rlawltn9718
opened
1 year ago
1
AUC scores calulation
#368
xiebb7
opened
1 year ago
0
hg19-500bp-upstream-7species.mc9nr.feather file is missing in cisTarget database
#367
zhouxw27
closed
1 year ago
0
Not able run load databases getting error
#366
luckysardar
closed
1 year ago
0
Why initializeScenic error: 'motifAnnotations_hgnc' not found?
#364
KOBE24DUNK
closed
1 year ago
11
Motif Database Error When Running Example Code
#361
pagarwal14
opened
1 year ago
1
Next