-
* pysradb version: 0.9.0
* Python version: 3.5.1
* Operating System: Linux (CentOS6)
### Description
```
$ pysradb search '"ribosome profiling"' | head
```
Generated:
```
study_accession ex…
-
Release preparation tickets (labelled [R2.0](https://github.com/riboviz/RiboViz/labels/R2.0)):
* [all](https://github.com/riboviz/RiboViz/issues?utf8=%E2%9C%93&q=label%3AR2.0)
* [closed](https://g…
-
Using experiences from #48, write a blog post for the SSI blog, https://www.software.ac.uk/blog (and link to previous blog post, https://www.software.ac.uk/blog/2019-07-24-riboviz-understanding-protei…
-
Reading your excellent [ORFquant preprint](https://doi.org/10.1101/608794), I had a few clarifications:
> Ribo-seq reads were stripped of their adapters using cutadapt
* what set of adapters did…
-
We need to test-run RiboViz on some new datasets to check that it can actually work. These will not be incorporated into the automated testing, but will provide a larger informal test. And also move t…
-
I don't think I have permissions to create new branches. For now, I've placed all the things @FlicAnderson theoretically needs to recreate the issues I'm having https://rutgers.box.com/s/3d0se6r1g48tb…
-
Hi Elisa,
I tested my ribosome profiling libraries using this program last year. My co-authors are saying now that they notice a weird decrease in occupancy at E site for all codons ending in A in on…
-
Based on work from #48 and prototype in [workflows](https://github.com/riboviz/workflows):
* Implement Nextflow script, `prep_riboviz.nf`. Ensure that temporary and output files are copied (via Nex…
-
-
Provide a recommended citation on README.md:A suitable citation would be the RiboViz paper:
riboviz: analysis and visualization of ribosome profiling datasets, Carja et al., BMC Bioinformatics 2017…