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I submitted Bakta annotations to NCBI this week and over half had some fatal errors. They weren't hard to fix, but I wanted to let you know in case there's something that can be done with a future upd…
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https://github.com/asyaryzhikhina/python/blob/297d8c00e56307b3f1fc03c2d98f715c27ed1b65/DNA/1.py#L2-L3
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Hello,
Thank you for amazing tool.
I am new to CNV analysis using RNA-Seq.
Is it possible to use CaSpER for a single bulk RNA-Seq sample such as a tumor sample from a single patient?
Thank you…
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Hi Bokai and Shuxiao,
I would first like to thank you for developing this interesting method and making it open-sourced. I found the protein annotation and spatial pattern discovery section particu…
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Hi,
I am working with a very larger sc/sn RNA-Seq dataset. Starting from an h5ad file have used BPcells package to load data in-memory as follows:
`raw
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Hi,
I am working with a very larger sc/sn RNA-Seq dataset. Starting from an h5ad file have used BPcells package to load data in-memory as follows:
`raw
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@susansjy22 , here @aodainic7 will be able to provide some code.
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Hi,
10x has a newish product ["flex"](https://www.10xgenomics.com/products/single-cell-gene-expression-flex) that allows for the sequencing of fixed nuclei.
It works based on [a set of 20 000 pr…
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I was trying to use the `FindConservedMarkers()` function to identify differentially expressed genes across multiple samples, but error messages persisted.
I saw some ongoing discussions about whic…
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dsb does not run when half the samples are rna + adt, half the samples are rna only (and no intersection between rna,adt is taken).
fix is to take the intersection of the background: mu.pp.inters…