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```
clear() needs to be a SBG::Complex method that clears all derived calculations
and lets' them be lazy_built again
```
Original issue reported on code.google.com by `chad.a.davis@gmail.com` on 18…
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```
Bio::Seq and Bio::Node not necessary
Can just define overload operators for, e.g. stringification, where needed.
See SBG::Search::Blast for an example
```
Original issue reported on code.googl…
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- [ ] Check major current implementations. How (if at all) do they cache input `File`s with `HTTP(S)` `location`s?
- [ ] Curoverse
- [x] SBG
- [ ] Toil
- [ ] Cromwell
- [ ] Work with si…
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@zymergen-msneddon encountered an issue where, if logged into
images.sbgenomics.com with docker, public docker images could not be pulled
from dockerhub. Logging out allowed these to be then be downlo…
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1) we are trying to trigger below request but we are getting invalid_client response (401 status)
2)POST /user/oauth2/token HTTP/1.1
Host: qa.dcf.planx-pla.net
Content-Type: application/x-www-form-ur…
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A single configuration value could be added that changes the default behaviour when staging files and initial working directory from copy to link. This configuration can still be overridden with "sbg:…
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I have a toy example that requires an exclusive parameter and a regular parameter and it seems to run fine when I try `cwl-runner` (see copied below). I would like to adapt a tool in Rabix to use the …
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My 3.10 site has been running well until I upgraded my Gantry from 5.4 to 5.5.17 today.
I've also upgraded my template Helium to 5.5.17.
The error message is like
An exception has been thrown …
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- Mailing List
- [x] [gama-platform@googlegroups.com](mailto:gama-platform@googlegroups.com)
- [x] [sma@loria.fr](mailto:sma@loria.fr)
- [x] [SIMSOC@jiscmail.ac.uk](mailto:SIMSOC@jiscmail.ac.uk) …
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I would like to propose a feature to correct the rotamers, mainly asparagine, glutamine and histidines while working with protein models. Jimmy proposed the use of https://flipper.services.came.sbg.ac…