rabix bunny issues - Githubissues

rabix / bunny

[Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0

http://rabix.io

Apache License 2.0

74 stars 28 forks source link

issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

add a check for the "name:" field for SchemaDefs

#456 ionox0 closed 3 years ago
0
small issue with the install URL

#455 colinkcurtis opened 5 years ago
0
Error when running rabix-engine-rest

#454 kmavrommatis closed 5 years ago
1
Very large java stack traces generated in rabix composer logs

#453 zymergen-mbarton opened 5 years ago
2
cache previous runs from TES

#452 kmavrommatis opened 5 years ago
0
Support for ECMAScript 6.0 in rabix executor and composer

#451 zymergen-mbarton opened 5 years ago
2
Get TES task id from rabix

#450 kmavrommatis opened 5 years ago
1
Executor can either pull from images.sbgenomics.com or dockerhub but not both

#449 zymergen-mbarton opened 5 years ago
1
change example config for amazon s3; fix variable scope issue

#448 adamstruck closed 5 years ago
1
TES backend fails citing s3 filesystem error

#447 kmavrommatis closed 5 years ago
11
Error, cannot cast String to Map for array of records as input

#446 whlavina opened 5 years ago
0
FastClasspathScanner is outdated -- consider porting to ClassGraph

#445 classgraph-robot opened 5 years ago
0
Executor does not work with Java 10 on windows

#444 ghost opened 6 years ago
0
Documentation error: Installation

#443 mwyczalkowski opened 6 years ago
2
Failed to stage secondary files

#442 Shenglai opened 6 years ago
1
Error when using SchemaDefRequirement

#441 jeremiahsavage opened 6 years ago
0
Array of strings in glob is not supported

#440 bogdang989 closed 6 years ago
1
Fix flag to config mapping for TES backend

#439 adamstruck closed 6 years ago
0
Fix flag to config mapping for TES backend

#438 adamstruck closed 6 years ago
0
Fix deletion of root input files

#437 smiljevic closed 6 years ago
0
Support for multiple S3 providers

#436 adamstruck closed 6 years ago
0
Develop

#435 milos-ljubinkovic closed 6 years ago
0
Rabix Executor feature request - grouping and required flags

#434 DavidAustinNix opened 6 years ago
0
Feature/composer logs

#433 AleksandarPetrovicSBG closed 6 years ago
0
Fix CommandLineBuilder behaviour when prefix is null and itemSeparator is set

#432 AdrianMBarrera closed 5 years ago
2
best way to run rabix/bunny on HPC?

#431 davidroberson closed 6 years ago
8
Fix CommandLineBuilder behaviour when prefix is null and itemSeparator is set.

#430 AdrianMBarrera closed 6 years ago
2
Escaped dollar sign now doesn’t start an expression

#429 milos-ljubinkovic closed 6 years ago
0
Fix checking required inputs in rabix-cli

#428 smiljevic closed 6 years ago
1
Bugfixes

#427 milos-ljubinkovic closed 6 years ago
0
TES backend bugfix

#426 adamstruck closed 6 years ago
6
TES and S3 bugfixes

#425 adamstruck closed 6 years ago
0
Output type record issues

#424 milos-ljubinkovic closed 6 years ago
1
Develop

#423 milos-ljubinkovic closed 6 years ago
0
ResourceRequirements not passed to TES backend

#422 adamstruck closed 6 years ago
0
Support for...of array iteration

#421 kmhernan opened 6 years ago
7
loadContents fails for s3 files

#420 adamstruck closed 6 years ago
1
Fix intermediary files

#419 smiljevic closed 6 years ago
0
Support for input files from multiple s3 providers

#418 adamstruck closed 6 years ago
3
Provider "s3" not found

#417 adamstruck closed 6 years ago
3
Windows 7+ support

#416 milos-ljubinkovic closed 6 years ago
0
Fixed LSF for conformance tests

#415 AleksandarPetrovicSBG closed 6 years ago
0
Fix job stats of wfs with nested workflows

#414 smiljevic closed 6 years ago
0
Bugfix/cwlprocess

#413 milos-ljubinkovic closed 6 years ago
0
Fixes for new conformance tests and tes

#412 milos-ljubinkovic closed 6 years ago
0
SBG_Prepare_Intervals Failed evaluating expression interval bed error

#411 gezthxbio closed 6 years ago
18
TES backend workflow bug

#410 adamstruck closed 6 years ago
3
Inputs are duplicated in generated TES task message

#409 adamstruck opened 6 years ago
1
TES backend doesn't seem to support the CWL allowed exit codes

#408 kmhernan opened 6 years ago
12
S3 files not supported in 1.0.4 release

#407 adamstruck closed 6 years ago
11