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do we need to provide uniprotIDs for the SIF nodes?
learn more here: saezlab/CellNOptR#9
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### Operating System
Ubuntu 22.04
### Other Linux
_No response_
### Workflow Version
wf-basecalling v1.4.2-g9c0f9db
### Workflow Execution
Command line (Local)
### Other workflow execution
_N…
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Hello,
Thanks for developing the tool. I was able to run without problems the 'Cluster' module for 39 samples individually (each sample separately) using the code:
`./PhylogicNDT.py Cluster -i ${i…
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Hi, I am running the latest cnvkit image on the docker hub.
I get spurious calls where many reads with mapq = 0. I tried cnvkit.py coverage with the -q option, but it does not do anything. Is this a …
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:bug: Your bug may already be reported!
Please search on the [issue tracker](https://github.com/NCAR/DART/issues) before creating a new issue.
### Describe the bug
This is not a bug in DART. This…
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### What happened in your environment?
Inside Gitlab CI job trying to push the sif with oras registry results in a 1 hour hanging job after the push command
```yaml
build-sif:
stage: build
ti…
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```
> singularity --version
singularity-ce version 4.1.1
```
xposted from https://stackoverflow.com/questions/67451148/failed-to-add-as-session-directory-path-is-not-an-absolute-path-in-singularit…
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I tried using the tool to build test image (sif) using the test.yml file but got this error as
`python3 env2sif.py --input_file test/test_conda.yml --output_file test.sif --environment_type conda…
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Hi,
After importing and opening the SIF file using this 'sif_parser', I want to acquire the timestamps, but in the Fast Kinetics Mode, the timestamps are recorded as 0. But there are a few raw data…
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As this code is not maintained anymore I have re implemented SIF heavily reuses this implementation as I needed it for a project. I focused on generating the embedding using SIF. I thank the authors…