epi2me-labs wf-basecalling issues

epi2me-labs / wf-basecalling

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ERROR ~ Error executing process > 'wf_dorado:dorado (10)' Caused by: Failed to pull singularity image

#55 Ashok-pappu opened 4 days ago
2
Process `getParams` terminated with an error exit status (127)

#54 Vikasmh closed 4 days ago
4
Major drop quality score with --trim adapters

#53 felipebatalini opened 1 week ago
1
wf-basecalling crash in terminal mode

#52 msubirana opened 2 weeks ago
0
Increase the number of wf_dorado:dorado processes

#51 DustinSokolowski opened 1 month ago
0
trimming regression in dorado@v0.8.0

#50 istvankleijn opened 1 month ago
1
could not select driver with capabilities [[gpu]]

#49 Moos-7 opened 1 month ago
3
cannot install epi2me in the cluster!?

#48 shankhanath opened 1 month ago
4
2 Run failed on same step - wf_dorado:align_and_qsFilter

#47 fidibidi closed 2 months ago
2
Multiple modifications calling

#46 HudoGriz opened 4 months ago
0
Problem running the pipeline on MacOS

#45 imerelli closed 4 months ago
1
Specify Dorado memory requirements

#44 mgperry closed 4 months ago
2
demultiplexing fails with CRAM

#43 istvankleijn opened 4 months ago
2
`[error] Unknown argument: --kit-name` when combining --duplex with --barcode_kit SQK-NBD114-96

#42 chris-krohn opened 4 months ago
1
What arguments are accepted for demux_args?

#41 chris-krohn closed 4 months ago
1
How to set the --trim parameter in Dorado when running wf-basecalling

#40 CyberGypsy6324 closed 4 months ago
2
Switching revision to version prior to v1.1.9

#39 istvankleijn opened 5 months ago
2
Process `wf_dorado:dorado (7)` terminated with an error exit status (139)

#38 istvankleijn closed 4 months ago
3
Workflow can't find minimap2 and/or seq_cache_populate.pl

#37 lucy924 closed 6 months ago
2
Barcode demultiplexing

#36 danpal96 closed 7 months ago
1
ln: failed to create symbolic link 'OPTIONAL_FILE': File exists

#35 weishwu opened 7 months ago
7
Process `cram_cache` terminated with an error exit status (255)

#34 LisaHagenau closed 8 months ago
3
report shows first chunk only

#33 istvankleijn closed 6 months ago
2
duplex basecalling with modified bases

#32 istvankleijn opened 9 months ago
1
Failed to create FASTQ output

#31 PavelSenkyrik closed 8 months ago
2
Adapter trimming

#30 pawanchk closed 9 months ago
5
How to barcoding after basecalling?

#29 msubirana closed 9 months ago
1
Average Qscore

#28 valery-shap closed 8 months ago
4
The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested

#27 mikeds211 closed 10 months ago
1
Fixed nextflow_schema.json, along with updated config.

#26 medmaca closed 9 months ago
1
wf_dorado:dorado(1) error, command exit status 125

#25 c3305637 closed 11 months ago
1
docker container for the v0.4.3 release

#24 yuukiiwa closed 11 months ago
2
It got error when run in EPI2ME Labs

#23 piroonj closed 1 year ago
1
pulling update error

#22 BastianBrauer closed 1 year ago
1
Syntax for calling multiple mods at once

#21 annabel-NZ closed 1 year ago
1
Remora-cfg doesn't actually have all the configs that are linked in description.

#20 fidibidi closed 1 year ago
0
Error when using demo data option

#19 sachiwije closed 1 year ago
3
Dorado failed with exit status 125

#18 dixith-abhi closed 1 year ago
3
dorado_summary fails for fast5

#17 istvankleijn closed 1 year ago
3
CUDA unknown error - Dorado 0.3.1

#16 Mathias-Boulanger closed 1 year ago
3
bamstats taking forever

#15 istvankleijn closed 1 year ago
6
output files separately for each sample

#14 istvankleijn closed 1 year ago
2
dorado release timeline

#13 istvankleijn closed 1 year ago
1
CUDA device requested but no devices found.

#12 SamStudio8 closed 1 year ago
9
[Bug]: params.output_bam = false not reflected in process `dorado` output block and script

#11 robinfchan closed 1 year ago
5
[Bug]: Add support for duplex stereo basecalling

#10 mdemouth closed 1 year ago
4
[Bug]: Having problems with: ERROR ~ Error executing process > 'wf_dorado:dorado (1)'

#9 MarioCazalla closed 1 year ago
1
[Bug]: missing basecalling model?

#8 ChristopherRichie closed 1 year ago
5
[Question]: requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8)

#7 sklages closed 1 year ago
2
[Bug]: Not compatible with Azure batch executor

#6 benbfly closed 1 year ago
8