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I've been trying to build our cloud-native pipelines using trioCanu, and think this might be useful for the canu developers.
Show below is the resource usage during `splitHaplotype`.
![splitHaplot…
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I would like to retrieve the alignment information for a given secondary or supplementary alignment .
For example, in duplicate marking, we may choose to use the primary alignments of template (rea…
nh13 updated
4 months ago
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### Available datasets
- [x] **merfish**
- [x] **mibitof**
- [x] **nanostring**
- [x] **toy/artificial dataset**
- [x] **visium**
### Missign datasets
- [ ] maldi (from metaspace, see link i…
giovp updated
8 months ago
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Is it possible to use DADA2 to process ITS1 or ITS2 single read fastq files generated by ONT. The reads are on average 750 in length. Thanks for your input.
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Hi all,
I'm trying to run Canu (v2.2) on some old raw CLR reads. I am running the jobs on a linux server with SLURM. I created an interactive SLURM session and then submitted my Canu line:
```
…
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e.g. the query
```SPARQL
SELECT DISTINCT ?item ?itemLabel ?_PubMed_ID
WHERE
{
?item wdt:P31 wd:Q13442814 ;
rdfs:label ?itemLabel .
OPTIONAL { ?item wdt:P698 ?_PubMed_ID. }
FIL…
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https://mp.weixin.qq.com/s/goijaW-QFXH4RroEvlsq8g
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Hello, I am a BI graduate student in South Korea dealing with ONT long-read sequencing data for the first time.
I am working on a project to align and analyze targeted long-read sqeuencing data, and…
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Dear all,
The proposal has been made to obsolete GO:0005844 polysome and GO:0042788 polysomal ribosome
see https://github.com/geneontology/go-ontology/issues/24651
Experimental annotations th…
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Hi @quentinblampey, thanks for your contribution to Sopa! After reading your manuscript, I wonder if Sopa supports upstream analysis such as image registration, blob detection, and transcript decoding…