marbl canu issues - Githubissues

marbl / canu

A single molecule sequence assembler for genomes large and small.

http://canu.readthedocs.io/

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Illegal division by zero..... Execution.pm line 1441

#2326 JosephHeras opened 1 day ago
1
HiCanu failing for real world HiFi data

#2325 Oieswarya opened 5 days ago
3
How to install canu

#2324 Narmatha99 opened 1 week ago
5
Canu failed when I ran on the HPC

#2323 WengangXbio opened 1 week ago
1
Abnormal error

#2322 ewoutcrombez opened 1 week ago
0
Strange Error

#2321 gunjanpandey opened 1 week ago
1
ERROR : Failed to find the number of jobs in 'unitigging/0-mercounts/meryl-count.sh'. 2.3dev

#2320 lborcard opened 3 weeks ago
0
canu issue

#2319 NINI-recherche closed 1 day ago
2
More reads in output than reads in input

#2318 ylaforgue59 closed 3 weeks ago
2
ovStoreDump command

#2317 tianjio closed 2 weeks ago
2
Read coverage (0) lower than allowed. minInputCoverage = 10. Help me boss

#2316 helloworldABCD1234 closed 2 weeks ago
4
Something goes wrong when I use canu. Help me plz

#2315 helloworldABCD1234 closed 1 month ago
2
Error to launch Canu v2.2 in grid. sqStoreCreate failed; boom!.

#2314 ElenaCatelan closed 1 month ago
4
Canu v.2.2: Failed to generate corrected reads!

#2313 Voseck closed 2 weeks ago
4
Canu error: CRASH: Failed to submit compute jobs. CRASH: qsub: Failed to route job to queue interactive

#2312 ShiriAr closed 1 month ago
9
Failed to open meryl.WORKING/0x110101[025].merylData for reading: Too many open files

#2311 arslan9732 opened 2 months ago
1
200x coverage job stuck at 1-overlapper with "Pathname of a file, directory or other parameter too long"

#2310 brunocontrerasmoreira closed 1 week ago
7
grid options, meryl-count and disk quota

#2309 brunocontrerasmoreira closed 2 months ago
4
*.contigs.layout.readToTig file

#2308 tianjio closed 1 month ago
3
Canu fails due to missing time limit specification

#2307 iwilkie closed 2 months ago
2
Overlapper step failed twice

#2306 lilypeck closed 2 months ago
10
sqStoreCreate failed. Failed with exit code 1. (rc=256)

#2305 yuanzhao0502 closed 1 month ago
4
Possible problem with consensus step

#2304 jacopoM28 closed 2 months ago
1
reads overlap file

#2303 tianjio closed 2 months ago
1
How much storage space is required for the assembly of a large genome species?

#2302 Jung19911124 closed 2 months ago
1
Error: Could not establish configuration source

#2301 Hufflepuff9000 closed 2 months ago
1
Question: parameters for better quality data

#2300 marija-kra closed 2 months ago
1
how to regenerate the readNames.txt

#2299 xychen233 closed 2 months ago
2
no Corrected reads created

#2298 lborcard closed 1 month ago
10
Will Canu read correction reduce true variation for strain-typing ONT reads?

#2297 weishwu closed 3 months ago
2
reads correct with different depth but same results

#2296 tianjio closed 3 months ago
6
how to get only one contig by setting the parameter?

#2295 JWang52md closed 3 months ago
2
About the memory space and script

#2293 gdmdxl closed 3 months ago
2
Bogart BestOverlapGraph::removeLopsidedEdges

#2292 alpapan closed 3 months ago
1
Runing canu in conda environment in HPC, which one is the assembly contig file I that I should get?

#2291 JWang52md closed 3 months ago
3
some canu contigs are in reverse

#2290 majogalarion closed 4 months ago
4
Canu can't continue where it left off after shutdown

#2289 Artifice120 closed 4 months ago
14
Correction step parameters

#2288 tianjio closed 4 months ago
1
ERROR: Invalid command line option 'barcode06.fastq.gz'. Did you forget quotes around options with spaces?

#2287 lucyintheskyzzz closed 5 months ago
7
Bogart Failed, Unknown Options Error

#2286 bytoyo closed 4 months ago
2
CANU & Nextflow & SLURM

#2285 hbadrane closed 5 months ago
5
ctgStore not created in a subset of samples

#2284 TMAdams closed 5 months ago
9
No contigs.fasta file

#2283 Ladybug1030 closed 5 months ago
2
MacOS system: Canu run without any errors, but no FASTA file generated.

#2282 YuLanSky closed 5 months ago
4
How can I optimize Canu v2.2 for the SGE Grid, Canu v2.2 crashes when there multiple hosts on SGE

#2281 alvizain786 closed 5 months ago
4
Speeding up correction / assembly of large plant genome

#2280 theo-allnutt-bioinformatics closed 6 months ago
8
Repeated OOM crashes with up to 1t memory

#2279 barke042 closed 6 months ago
10
bubble contigs

#2278 wez078 closed 7 months ago
3
Decreasing the job size during trimming step (1-overlapper) to avoid exceeding time limit on cluster

#2277 AlWa1 closed 7 months ago
3
Canu v2.3 Failed with 'Segmentation fault'; backtrace (libbacktrace)

#2276 Lixx1989 closed 5 months ago
6