marbl canu issues - Githubissues

marbl / canu

A single molecule sequence assembler for genomes large and small.

http://canu.readthedocs.io/

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issues

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slurm submission problem with memory specification

#2350 AlcaArctica closed 3 days ago
2
Triocanu：Set the threshold of the kmers frequency manually

#2349 cheninouc closed 5 hours ago
2
Canu for shotgun metagenomic assembly of complex environments

#2348 Hedi65 opened 1 month ago
1
Make not run make: *** No targets specified and no makefile found. Stop.

#2347 huybo02 closed 1 month ago
2
HPC ran out of memory

#2346 katievigil closed 1 month ago
4
triocanu results: a large number of reads were undistinguishable from haplotypes

#2345 cheninouc closed 1 month ago
7
splitHaplotype

#2344 DayTimeMouse closed 1 month ago
1
fragemented and large assembly

#2343 gunjanpandey opened 2 months ago
4
Issue with Genome Assembly: Contigs.fasta File Size is Double the Expected

#2342 DryadDataDiver closed 2 months ago
2
Failed to submit compute jobs.

#2341 yt55 closed 2 months ago
5
canu memory problem

#2340 sfh1111 closed 1 month ago
5
Mhap overlap jobs failed, tried 2 times, giving up.

#2339 katievigil closed 2 months ago
12
Persistent failure of a subset of Mhap jobs.

#2338 zephyris closed 2 months ago
4
How to get corrected fastq files?

#2337 Rohit-Satyam closed 2 months ago
2
DoesTrobining work for Pacbio data from other offspring?

#2336 heziqing closed 2 months ago
3
Canu command to only generate corrected reads

#2335 Artifice120 closed 3 months ago
2
Undefined subroutine &canu::Report::caExit called" during CANU Assembly

#2334 Pvaskez closed 2 months ago
3
Read correction does not produce any output

#2333 Ppatel09-wq closed 3 months ago
11
HERRO corrected ONT with trio data

#2332 YouxinZhao closed 3 months ago
1
Canu Exit code 1, sqStoreCreate failed; boom!.

#2331 CheeseLover2020 closed 3 months ago
4
Recommendations in plant genome

#2330 enriquepola1996 closed 3 months ago
2
Failed to submit compute jobs

#2329 car0053 closed 4 months ago
3
ONT targeted long-read sequencing trimmed data error correction issue

#2328 swcho-HYBigLab closed 4 months ago
8
assembly overlapped amplicon data, where to find contained reads

#2327 xiaoli-dong closed 4 months ago
1
Illegal division by zero..... Execution.pm line 1441

#2326 JosephHeras closed 4 months ago
2
HiCanu failing for real world HiFi data

#2325 Oieswarya closed 4 months ago
4
How to install canu

#2324 Narmatha99 closed 3 months ago
13
Canu failed when I ran on the HPC

#2323 WengangXbio closed 4 months ago
2
Abnormal error

#2322 ewoutcrombez closed 2 months ago
3
Strange Error

#2321 gunjanpandey closed 4 months ago
3
ERROR : Failed to find the number of jobs in 'unitigging/0-mercounts/meryl-count.sh'. 2.3dev

#2320 lborcard closed 4 months ago
2
canu issue

#2319 NINI-recherche closed 4 months ago
2
More reads in output than reads in input

#2318 ylaforgue59 closed 5 months ago
2
ovStoreDump command

#2317 tianjio closed 5 months ago
2
Read coverage (0) lower than allowed. minInputCoverage = 10. Help me boss

#2316 helloworldABCD1234 closed 5 months ago
4
Something goes wrong when I use canu. Help me plz

#2315 helloworldABCD1234 closed 6 months ago
2
Error to launch Canu v2.2 in grid. sqStoreCreate failed; boom!.

#2314 ElenaCatelan closed 6 months ago
4
Canu v.2.2: Failed to generate corrected reads!

#2313 Voseck closed 5 months ago
4
Canu error: CRASH: Failed to submit compute jobs. CRASH: qsub: Failed to route job to queue interactive

#2312 ShiriAr closed 6 months ago
9
Failed to open meryl.WORKING/0x110101[025].merylData for reading: Too many open files

#2311 arslan9732 closed 4 months ago
1
200x coverage job stuck at 1-overlapper with "Pathname of a file, directory or other parameter too long"

#2310 brunocontrerasmoreira closed 5 months ago
7
grid options, meryl-count and disk quota

#2309 brunocontrerasmoreira closed 7 months ago
4
*.contigs.layout.readToTig file

#2308 tianjio closed 6 months ago
3
Canu fails due to missing time limit specification

#2307 iwilkie closed 7 months ago
2
Overlapper step failed twice

#2306 lilypeck closed 7 months ago
10
sqStoreCreate failed. Failed with exit code 1. (rc=256)

#2305 yuanzhao0502 closed 6 months ago
4
Possible problem with consensus step

#2304 jacopoM28 closed 7 months ago
1
reads overlap file

#2303 tianjio closed 7 months ago
1
How much storage space is required for the assembly of a large genome species?

#2302 Jung19911124 closed 7 months ago
1
Error: Could not establish configuration source

#2301 Ecoulembier closed 7 months ago
1