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Dear beloved OpenMole developers,
several years ago, managers of clusters identified a risk with the usage of Singularity, as it might lead to high I/O loads on shared disks. You can find this disc…
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# Issue: Environment not set
Since March, HTCondor jobs on lxplus do not have the CMSSW environment set correctly, nor `JOBID` or `TASKID` as defined in [`submit_HTCondor.sub`](https://github.com/cms…
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This would make it easier to integrate into pipelines, e.g. [nf-core](https://nf-co.re/).
https://biocontainers.pro/ https://github.com/BioContainers
Edit: When following the installation instru…
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We want to run some of the [Toil](https://toil.readthedocs.io/) interpreters for WDL and CWL with TES under Funnel. We run TES jobs by running Toil containers, which we then pass a command through to …
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Hi @arnaudbore,
Moving this here as requested. I get the following when using `scilus-flows_1.5.0.sif` built from DockerHub:
```
singularity run /groups/adamraikes/singularity_images/scilus-flo…
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### Description of feature
Break out the feature for downloading singularity containers from nf-core download and put it in it's own command line. When running nf-core download the tool could incorpo…
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It would help development if we could use a consistent method for both production deployment and setting up development instances.
Currently, the [`Makefile`](https://github.com/mskcc/ridgeback/bl…
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slc6:
```
cd /eos/user/k/kati/containers/CMSSW_5_3_32/src
setenv SINGULARITY_CACHEDIR "/tmp/`whoami`/singularity"
singularity shell -B /afs -B /eos -B /cvmfs docker://cmssw/slc6:latest
```
i…
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The processing scripts currently work on Zeus but they don't work on the Garrawarla cluster.
Instead of using `module load` to get access to the various programs, we instead need to use the correct…
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How to use singularity containers with this pipeline.
During the writting of the pipeline I had set up the following to be able to run the pipeline:
```
profiles {
singularity {
s…