EMBL-PKU BASALT issues - Githubissues

EMBL-PKU / BASALT

MIT License

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Date of update to v1.1.0 in conda?

#43 zhaoze2020 opened 3 days ago
0
FileNotFoundError: [Errno 2] No such file or directory: 'Predicted_potential_outlier.txt'

#42 Songq-20 opened 6 days ago
1
VAMB and BASALT

#41 vicru93 opened 1 week ago
0
The error while BASALT installed with "conda env create -n BASALT --file basalt_env.yml"

#40 ggezwp123 opened 2 weeks ago
0
Bug shows "FileNotFoundError: [Errno 2] No such file or directory: 'BestBinset_outlier_refined_filtrated_retrieved_checkm/storage/'"

#39 1023011930 opened 1 month ago
5
Output Basalt

#38 vicru93 closed 1 month ago
2
3rd bin selection did not perform, because there is only one assembly!

#37 Enewmoon opened 1 month ago
5
Is it normal to stay at this step for a long time?

#36 1023011930 opened 1 month ago
6
AttributeError: 'NoneType' object has no attribute 'split'

#35 Enewmoon closed 1 month ago
0
Redundant output

#34 Wang0293 opened 1 month ago
1
Error when running with test dataset：ModuleNotFoundError: No module named 'torch'

#33 1023011930 opened 1 month ago
3
UnboundLocalError: local variable 'level_num' referenced before assignment

#32 liaohu1231 opened 1 month ago
2
BASALT stopped running

#31 Songq-20 opened 1 month ago
4
UnboundLocalError: local variable 'target_bin_folder' referenced before assignment

#30 Songq-20 opened 1 month ago
3
UnboundLocalError: local variable 'seq len' referenced before assignment

#29 mijiandui opened 2 months ago
0
FileNotFoundError: [Errno 2] No such file or directory: '/work/home/songbing/.cache/BASALT' or ModuleNotFoundError: No module named 'Bio'

#28 B1991ing opened 2 months ago
0
FileNotFoundError: [Errno 2] No such file or directory: '/work/home/songbing/.cache/BASALT'

#27 B1991ing opened 2 months ago
2
a question about dRep and the source of MAGs

#26 liupfskygre opened 2 months ago
1
UnboundLocalError: local variable 'bam_sorted2' referenced before assignment

#25 Aveglia opened 2 months ago
1
ModuleNotFoundError: No module named 'symbol'

#24 haihao999 opened 2 months ago
0
bowtie2每次只运行一个，太慢了，是否可以设置平行几个？

#23 JiayinZhangfdu opened 2 months ago
2
BASALT create some file named core.123xxx after running.

#22 Songq-20 closed 2 months ago
2
Running error: UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte

#21 wangyujie000 closed 3 months ago
1
Only use contig

#20 wangyujie000 closed 3 months ago
1
Error finding "quality_report.tsv" and "*vamb/clusters.tsv'

#19 pthieringer opened 3 months ago
6
command not found

#18 WUD2018 closed 3 months ago
12
the threads setting is not applied for all implemented tools

#17 liupfskygre closed 3 months ago
1
how will BASALT set the min length contigs for each binner

#16 liupfskygre opened 3 months ago
2
run BASALT with multiple assemblies and short reads from several samples

#15 liupfskygre opened 3 months ago
3
where is the 'Bin merging program"

#14 zoubohao opened 3 months ago
1
checkm2 database not found

#13 Caiyulu-818 opened 3 months ago
2
don't hard-code model location

#12 xvazquezc opened 3 months ago
2
BASALT env does not contain BASALT command

#11 bowmanjeffs opened 3 months ago
1
Incorporating previous binning attempts

#10 hrwaik opened 4 months ago
3
FileNotFoundError: [Errno 2] No such file or directory: '/home/data/JGM/BASALT/TMP_D7_E6/BestBinset_outlier_refined_filtrated_retrieved_retrieved_re-assembly_binset_checkm/storage'

#9 Wang0293 opened 4 months ago
3
IndexError: list index out of range

#8 eperezv opened 4 months ago
2
TWO basalt_main.py

#7 PonderLi closed 6 months ago
1
EXTRA_BINNERs didn't start and ZeroDivisionError: division by zero

#6 rusanovaA closed 3 months ago
1
Contigs supported?

#5 Wang0293 closed 9 months ago
0
'NoneType' object has no attribute 'split'

#4 cc9678 closed 3 months ago
1
IndexError: list index out of range

#3 raw937 closed 3 months ago
1
The issue of CheckM

#2 Yanh35 closed 3 months ago
1
IndexError: list index out of range

#1 Caiyulu-818 closed 3 months ago
2