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The nomenclature used in PMID:9971792 seems to follow Kabat
The TCR information in the paper is
| v.beta | cdr3.beta | j.beta | d.beta | v.alpha | cdr3.alpha | j.alpha |
|…
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We are working on annotation documentation for MF-to-BP relations and would like to assess the extent to which relations, other than 'part of', have been used to link MFs to BPs in Noctua.
We would…
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I am attempting to use the BuildDatabaseFa.pl script from Trust4 to analyze T-cell and B-cell receptor sequences in Vicugna pacos (alpaca). I have encountered an error during the script execution, and…
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GO:0038187 pattern recognition receptor activity
Definition
Combining with a pathogen-associated molecular pattern (PAMP), a structure conserved among microbial species, or damage-associated mol…
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Hi,
Thanks for developing this user-friendly tool. When I was studying the literature you published on bioRxiv, I was very interested in one of the illustrations. As shown in the figure below. Can yo…
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* **GO term ID and label for which you request a new superclass**
GO:0033214 siderophore-dependent iron import into cell
* **New superclass (parent) suggested**
GO:0044718 siderophore transme…
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and ('has plasma membrane part' some 'urokinase plasminogen activator surface receptor')
The mechanism is different in teleost so this is not a true statement PMID 22733817
and ('has plasma m…
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Hi, I have my own GO annotation data with multiple treatment groups for comparison, and so I did the comparecluster with 'enricher' function. I would like to visualize the result in cnetplot with gene…
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Hello,
Thanks for this very user-friendly package!
I was generating frequency Heatmaps using the heat_freq() function and I noticed that the sender and receiver cell types are ordered alphabetical…
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Hi
I am trying to curate DLL1 and DLL4 (orthologs of fly delta/Dl). I have annotated these as having receptor ligand activity - as they bind to NOTCH. But I would like to curate Notch with a term t…