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rnabioco
/
djvdj
An R package to analyze single-cell V(D)J data
https://rnabioco.github.io/djvdj
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Reproducibility issues
#145
Ahmedalaraby20
closed
1 month ago
1
Malformed input data, unexpected `NA`s are present
#144
Ahmedalaraby20
opened
3 months ago
0
pct in plotgene useage is >100
#143
Ahmedalaraby20
closed
3 months ago
1
Differences in diversity analysis when using other packages
#142
abedkurdi
closed
1 month ago
3
plot_diversity output
#141
Ahmedalaraby20
closed
3 months ago
4
Import vdj
#140
sheridar
opened
8 months ago
0
i am trying to import vdj data "filtered_contig_annotations.csv" in seurat object but it keep giving me error
#139
rimanpreetkaur
closed
6 months ago
11
Import vdj
#138
sheridar
closed
8 months ago
0
update workflow
#137
sheridar
closed
8 months ago
0
p values for frequency calculations
#136
sheridar
closed
9 months ago
0
related to djvdj library
#135
Rimanpreet1
closed
10 months ago
5
making compatible with older versions of dplyr
#134
kwells4
closed
10 months ago
4
fixing mutation frequencies
#133
kwells4
closed
1 year ago
4
Mutation frequencies
#132
kwells4
closed
1 year ago
1
import bug #130
#131
sheridar
closed
1 year ago
0
Malformed input data, multiple clonotype_ids are associated with the same cell barcode
#130
Ahmedalaraby20
closed
1 year ago
6
update vignettes
#129
sheridar
closed
1 year ago
0
n label
#128
sheridar
closed
1 year ago
0
Misc fixes
#127
sheridar
closed
1 year ago
0
calc_frequency
#126
sheridar
closed
1 year ago
0
breakup import_vdj
#125
sheridar
opened
1 year ago
0
Import vdj
#124
sheridar
closed
1 year ago
0
trim tests
#123
jayhesselberth
opened
1 year ago
1
rmdcheck warnings on macos
#122
jayhesselberth
opened
1 year ago
2
warnings after new tidyselect
#121
jayhesselberth
closed
1 year ago
4
add simpler bioccheck action
#120
jayhesselberth
closed
1 year ago
0
reorder facet labels
#119
jayhesselberth
closed
1 year ago
0
overlapping labels in circos plot
#118
jayhesselberth
closed
1 year ago
2
confusing `filter_paired` argument
#117
jayhesselberth
closed
1 year ago
1
Fixed erroneous column guessing in import_vdj
#116
jowkar
closed
1 year ago
5
informative error messages
#115
sheridar
closed
1 year ago
1
move external data sets to ExperimentHub
#114
jayhesselberth
opened
1 year ago
3
Fixes for bioc
#113
jayhesselberth
opened
1 year ago
0
use base pipe
#112
jayhesselberth
closed
1 year ago
0
update to base pipe
#111
jayhesselberth
closed
1 year ago
0
update README
#110
sheridar
closed
1 year ago
0
use base pipe
#109
jayhesselberth
closed
1 year ago
0
bioconductor-specific check results
#108
jayhesselberth
closed
1 year ago
1
chain argument for calc_frequency
#107
sheridar
closed
1 year ago
0
combine plot_gene_usage plots
#106
sheridar
closed
1 year ago
1
plot_frequency y-axis label
#105
sheridar
closed
1 year ago
1
Order of articles on package site
#104
sheridar
closed
1 year ago
1
update eval-tidy and gha workflows
#103
jayhesselberth
closed
1 year ago
1
README typos
#102
sheridar
closed
1 year ago
0
trim dependencies
#101
sheridar
closed
1 year ago
3
Clone similarity between samples
#100
potterae
closed
1 year ago
3
Clustering
#99
sheridar
closed
1 year ago
0
TCR antigene prediction
#98
Ahmedalaraby20
opened
2 years ago
0
Get complete TCR seq for cloning
#97
sheridar
opened
2 years ago
0
Plotting
#96
sheridar
closed
1 year ago
0
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