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The process appears to be running indefinitely. My input file contains roughly 57,000 mutations from 15 tumors. CloneFinder has been running over 72 hours, but no result yet.
I'm unsure what the …
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Hi- how do we use cnvkit when we have different capture kit (hence bait intervals) used for the normal and tumor samples (in our case, these are matched samples from same patients)? It seems with the …
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Hi,
a very good tool helps us classify tumors into different immune subtypes!
I run this function and get the results. in the results table, I found there are some discordances between BestCall and …
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- [x] Explore cBioPortal
- [x] See what data is available
- [x] What is their license
- [x] How can we download the data
- [x] etc
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Dear Laffy,
I read your new [glioblastoma paper](https://www.cell.com/cell/abstract/S0092-8674(19)30687-7) and would like to try your methods on our single-cell RNA-seq data.
But I have the foll…
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#### What data file(s) does this issue pertain to?
pbta-histologies.tsv
#### What release are you using?
v15
#### Put your question or report your issue here.
The `short_histology…
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is there any way to access this dataset anywhere else?
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Hi!
I really like your tool! I need to calculate differential expression between certain spots like you did in Figure 6c / 6d of your paper "Estimation of cell lineages in tumors from spatial trans…
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Hi,
I'm able to run the stCancer package on your public data. In your published paper, I can see that the same color annotation was used for clusters i.e. If I have a pink color cluster in the norma…
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Hi Ivan,
I hope you are doing well.
I have some confusion:
Did you use separate healthy atlas for each of the simulated tumor or same healthy atlas for all?
And the tumor I am able to simulate al…