-
The closest to finish DAG. Includes steps for harmonisation, locus breaker and collection.
- [x] Add the step for locus breaker and locus collection - [Step is called: LocusBreakerClumpingStep](https…
-
This is a great work! I want to know whether you can provide the LD information of between SVs/STRs and SNPs? or provide all SVs/STRs/SNPs at the individual level?
-
I found that postgap --summary_stats skips some variants from summary statistics file (variants that are parsed with --rsID and passes the threshold) and there are defferent number of variants in post…
-
1. How did we create the phenotype file? Did the outcome (ischemic stroke) get flipped to the opposite?
-
Hello Dr. Nicolazzi,
I'm trying to use your pipeline presently for some of our arrays that we just got. I have multiple issues but here's one of them in particular.
When I'm trying to run the "Best…
-
-
I'm writing a script that calls from two (potentially) different gcsfuse-mounted sources. In my testbed, they both happen to be on the same bucket, but in reality, they won't be. So, I tried to --moun…
-
**Is your feature request related to a problem? Please describe.**
The sample data I am working with is relatively homogenous but not well characterized by any of the populations in 1000G. Additional…
dym22 updated
6 months ago
-
Hi everyone,
I'm using mvSuSiE to do fine-mapping for two highly correlated traits (rg=0.6, estimated by LDSC) in UKBB at one 1Mb region.
Before running mvSuSiE , I performed the single-trait fi…
-
Hello,
I am using the UK Biobank phenotype data for my research. We have ~30 variables that we’ve pulled from the 502,269 subjects in the study. We want to use jomo to impute missing values, cluste…