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RajLabMSSM
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echolocatoR
Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
https://rajlabmssm.github.io/echolocatoR
MIT License
30
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11
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finemap_loci works for some loci, but not others?
#139
dym22
opened
2 months ago
2
Requesting Clarification on User-Supplied LD Matrices
#138
dym22
opened
3 months ago
1
Help me for this, I facd this error
#137
Nathan2598
closed
4 months ago
4
Functionnal fine-mapping
#136
ZoeGerber
opened
1 year ago
0
Error at step 1: compression in fwrite uses zlib library
#135
JonnyBaseball
opened
1 year ago
0
A valid target path could not be found
#134
KeXinDING37
opened
1 year ago
5
Can echolocatoR support co-localization analysis between GWAS-GWAS?
#133
forget999
opened
1 year ago
1
Singularity image fail to start
#132
mfasco
opened
1 year ago
5
ModuleNotFoundError: No module named 'scipy'
#131
manuelatan
opened
1 year ago
0
Incorporating POLYFUN
#130
JonnyBaseball
opened
1 year ago
2
vignettes causing errors in GHA (but not locally)
#129
bschilder
closed
6 months ago
4
GHA Docker: ` API rate limit exceeded`
#128
bschilder
closed
6 months ago
6
Update documentation website
#126
bschilder
closed
1 year ago
0
Problems with echolocatoR::finemap_loci
#125
rootze
closed
1 year ago
9
Conditional SNP error
#124
vermaa1
opened
1 year ago
7
Conda Install Link Not Found
#123
rootze
closed
1 year ago
1
Installation Errors
#122
vermaa1
closed
1 year ago
3
Column names in topSNPs do not agree with co
#121
AMCalejandro
closed
1 year ago
2
finemap_loci fails using echodata::construct_colmaps if some parameters are set to NULL
#120
AMCalejandro
closed
1 year ago
1
MAF cannot be inferred
#117
AMCalejandro
opened
1 year ago
3
ABF fails when running for a qt trait -- proportion_cases is missing
#115
AMCalejandro
closed
1 year ago
0
Problem with "N" using munged data
#114
AMCalejandro
closed
1 year ago
8
Problem with "N" using echodata::construct_colmaps
#113
AMCalejandro
closed
1 year ago
2
I am missing the basic vignette showing an example in how to run finemap_loci()
#111
AMCalejandro
closed
1 year ago
0
finemap_loci fails outside the MAGMA.CellTyping container
#110
AMCalejandro
closed
1 year ago
6
Error in standardize_subset
#109
PhoebeGuo97
closed
1 year ago
5
R CM check: sub-directories of 1Mb or more: doc
#108
bschilder
closed
1 year ago
2
Avoid conflicting namespaces
#107
bschilder
closed
1 year ago
1
Properly deprecate arguments
#106
bschilder
closed
1 year ago
1
Control verbosity levels
#105
bschilder
opened
1 year ago
0
`finemap_loci`: Disable/enable `tryCatch`
#104
bschilder
closed
1 year ago
2
finemap_loci() fails after querying VCF tabix file
#103
AMCalejandro
closed
1 year ago
4
Installation - An update
#102
AMCalejandro
closed
1 year ago
6
echofinemap missing functions - Installation issues
#101
AMCalejandro
closed
1 year ago
1
Output installing latest echoverse version
#100
AMCalejandro
closed
1 year ago
5
Fully support QTL studies
#99
bschilder
closed
1 year ago
1
Update vignettes for `echoverse`
#98
bschilder
closed
1 year ago
0
Error when running `finemap_loci` twice in a row
#97
bschilder
closed
1 year ago
2
Error in opening specified tabix file and creating tabix index
#95
PhoebeGuo97
closed
1 year ago
5
Error in opening specified tabix file and creating tabix index
#94
PhoebeGuo97
closed
1 year ago
1
Munging full summary stats is way too slow
#93
PhoebeGuo97
closed
1 year ago
1
Replacing slice_max() method
#91
AMCalejandro
closed
1 year ago
1
Error in dplyr::slice_max(., order_by = c(symbol, width), n = max_transcripts,...) - slice_max() does not efficiently get the transcript with max width
#96
AMCalejandro
closed
1 year ago
2
Unable to install "MungeSumStats" for R version in .yml echoR Conda environment
#89
Keaty19
closed
2 years ago
3
Error in dplyr::slice_max(., order_by = c(symbol, width), n = max_transcripts
#88
Captain-Pam
closed
1 year ago
2
echoverse - Failing to find an unknown package
#87
AMCalejandro
closed
1 year ago
7
New version of echolocatoR fails to read input files
#86
AMCalejandro
closed
1 year ago
1
Demo data: Error in `[.data.table`(y, x, nomatch = if (all.x) NA else NULL, on = by, ........
#85
michaelofrancis
closed
1 year ago
2
Hanging at: "+ CONDA:: Identified axel executable in echoR env."
#84
michaelofrancis
closed
2 years ago
3
Error in cDict[[chrom_col]] : subscript out of bounds
#83
mkoromina
closed
2 years ago
5
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