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RajLabMSSM
/
echolocatoR
Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
https://rajlabmssm.github.io/echolocatoR
MIT License
34
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11
forks
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Error in cDict[[chrom_col]] : subscript out of bounds
#83
mkoromina
closed
2 years ago
5
Error in py_run_file_impl(file, local, convert) : ImportError:
#82
michaelofrancis
closed
2 years ago
1
Create dependency graph of `echoverse` subpackages
#81
bschilder
closed
2 years ago
1
PolyFun: `x Column `SNP_x` doesn't exist.`
#80
bschilder
closed
2 years ago
1
Update "echoR" conda env to meet new PolyFun requirements
#79
bschilder
closed
2 years ago
5
`extract_snpvar.py: error: the following arguments are required: --sumstats`
#78
bschilder
closed
2 years ago
4
Issue when creating conda environment
#77
keekov
closed
2 years ago
5
Error in `[.data.table`(x, r, vars, with = FALSE) : column(s) not found: prob
#74
AMCalejandro
closed
2 years ago
9
Bad dependency spec "r-susier -> r-susieR"
#73
AMCalejandro
closed
2 years ago
4
[1] ".cred not detected. Using .snp instead."
#72
AMCalejandro
closed
2 years ago
13
Wrong merged_DT from merge_finemapping_results()
#71
saifulislampharma
closed
2 years ago
2
echolocatoR for quantitative GWAS.
#70
saifulislampharma
closed
2 years ago
2
Conda Installation Step 4 missing code
#68
jackhump
closed
2 years ago
1
Add to conda enviornment
#67
Al-Murphy
closed
2 years ago
2
Dev
#63
bschilder
closed
3 years ago
0
`echoverse`: Break up echolocatoR into sub-packages
#62
bschilder
opened
3 years ago
0
Enable GitHub Actions
#61
bschilder
closed
3 years ago
0
Replace`bcftools` functionality with R package
#60
bschilder
closed
3 years ago
1
Check genome build
#58
bschilder
closed
3 years ago
0
Integrate `MungeSumstats`
#57
bschilder
closed
3 years ago
1
Replace tabix/bgzip dependencies with `seqminer`
#56
bschilder
closed
2 years ago
3
Integrate ANNORE
#55
bschilder
closed
3 years ago
1
Integrate CAFEH
#54
bschilder
closed
3 years ago
1
Dev
#53
bschilder
closed
3 years ago
0
Dev
#52
bschilder
closed
3 years ago
0
Integrate JLIM
#51
bschilder
closed
3 years ago
1
Dev
#50
bschilder
closed
3 years ago
0
Plotting a specific window using PLOT.locus() function in EcholocatoR
#49
bk11-lab
closed
3 years ago
1
Install susieR from conda-forge
#48
jdblischak
closed
3 years ago
1
Error doing ABF
#47
alexMarCar
closed
2 years ago
8
Unable to reproduce "Full pipeline vignette"
#46
alexMarCar
closed
2 years ago
6
Error in Locus %in% loci : object 'Locus' not found
#45
alexMarCar
closed
3 years ago
1
Improve synonymous RSID detection
#44
bschilder
opened
3 years ago
1
Minimum version of susieR?
#41
jdblischak
closed
3 years ago
5
Add tiered installation strategy for XGR
#39
bschilder
closed
3 years ago
0
extra_installs() fails at the installation of refGenome
#38
tillandlauer
closed
3 years ago
2
Add binary installation instructions
#37
bschilder
closed
3 years ago
0
Dev: Add binary installation instructions
#36
bschilder
closed
3 years ago
0
Dev: add binary distribution instructions
#35
bschilder
closed
3 years ago
0
Update full_pipeline_vignette and improve conda env
#34
bschilder
closed
3 years ago
0
susieR not installing automatically
#33
bschilder
closed
3 years ago
3
conda: Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/opt/anaconda3/envs/echoR/lib/R/library/expm/libs/expm.dylib':
#32
bschilder
closed
3 years ago
2
Update echoR.yml
#31
bschilder
closed
3 years ago
0
Merge updated master into dev
#30
bschilder
closed
3 years ago
0
Merge dev branch
#29
bschilder
closed
3 years ago
0
Reduce conda channels to solve environment faster
#28
jdblischak
closed
3 years ago
2
Rstudio crashing during PLOT.locus step
#27
bschilder
closed
3 years ago
1
Error in susie_func(bhat = subset_DT$Effect, shat = subset_DT$StdErr, : XtX is not a symmetric matrix
#26
bschilder
closed
3 years ago
0
Share compressed binary distribution echolocatoR
#25
bschilder
closed
3 years ago
1
Install axel from conda-forge.
#23
jdblischak
closed
3 years ago
1
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