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Add the ability for non UQ data to be used in the portal
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## Goal
Support more SVE instructions and allow sharing between instructions with common formats.
## Existing SVE instructions to be changed
```ocaml
| I_ADD_SV of reg * reg * reg
| I_EOR_S…
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Currently when converting from Bam -> Cram, samtools strips out NM and MD tags because they are calculable on the fly and just reproduces them as needed. There is another tag, UQ, that fits in the sa…
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We should dynamically change the calibration for our UQ intervals during a run.
We should talk to Shengjia Zhao (Stanford) about this.
Needs:
- [x] Recalibration algorithms
- [ ] Being able …
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I sometimes see code like the following:
```r
x == "a" | x == "b"
```
It would be good to recommend using `%in%` in this situation. `%in%` is more readable and more efficient.
``` r
l Uni…
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Predictions on new data is slower in ranger compared to randomForest package. Especially for small datasets.
Here is a reproducible case predicting on a single datapoint:
``` r
library(microbenchm…
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authentication is required as these materials are in copyright and we can only distribute them to UQ staff and students. Ideally the system would let one get them directly if logged into the UQ system…
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Hi,
Does whatshap works with the vcf file generated by longshot? I am getting following error.
my command: whatshap phase --ignore-read-groups --reference Asm.pa_ctg.fasta Asm.pa_ctg_bwa_sorted_l…
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Hi I hope some help me I'm a newbie in bioinformatics.
I already built the index and when I run the program I get this error
Error: Encountered internal hisat exception (#1)
Command: hisat2_home/hisat…
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Hi, I want to write a module which looks something like:
in :: FromDevice(eth1)
q :: Queue
uq :: Unqueue
// do some processing here
out :: ToDevice(eth2)
in -> q -> uq -> processing here -> ou…