-
**Snakemake version**
Latest version
> 5.23.0
Brought in with:
```
$ mamba create -c conda-forge -c bioconda -n snakemake snakemake
$ conda activate snakemake
```
**Describe the bug*…
-
**Snakemake version**
> 5.8.1
**NOTE:** I will go over why I'm not using the latest version in the **additional context** section
**Wrapper version**
> 0.64.0/bio/fastqc
**Describe th…
-
I'm trying to run somaticseq_parallel on some samples VCFs to call the AI consensus.
The version for SomaticSeq is SomaticSeq v3.7.3. Version of XGBOOST is 2.0.2
I've run all mutation callers, then,…
-
Hello ,
I just tried to use with my data PGA package and i had an error in dbCreator:
library(BSgenome.Hsapiens.UCSC.hg19)
dbfile
-
Rules like [this for raxml](https://github.com/galaxyproject/tpv-shared-database/blob/957d87883dde0c32f155da7634fb518b695a8866/tools.yml#L2277) allocate additional cores but because most people set `m…
-
Hi there,
I am using the fisher exact test following the instructions on http://varianttools.sourceforge.net/Association/ExactTest . I am using it for autosomal and mitochondrial variants and want…
-
problem, installing from scratch on our HPC fails while trying to install a perl packages:
```
Encountered problems while solving:
- package perl-encode-locale-1.05-pl526_6 requires perl >=5.26.…
-
- Minimum read depth at a position to make a call
- Check VarScan documentation for more info
-
- Minimum base quality at a position to count a read
- Check VarScan Doc
-
- Minimum supporting reads at a position to call variants
- Check VarScan documentation for more info