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bcbio
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bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
https://bcbio-nextgen.readthedocs.io
MIT License
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Installation failed: unable to open conda.exe
#3750
ngakleng
opened
2 weeks ago
0
Discontinuation of bcbio-nextgen project
#3749
lpantano
opened
3 months ago
1
Question about genome data installation because of invalid download link of mirbase
#3748
lovebaboon1989
opened
3 months ago
2
Installation fails with Mamba error: Nothing provides libsodium >=0.4,<1.0 needed by bcbio-nextgen-1.0.0-py27_0
#3747
tpham2654
opened
3 months ago
3
Update ci.yml
#3746
lpantano
closed
4 months ago
0
Create ci.yml
#3745
lpantano
closed
4 months ago
0
Installation fails
#3744
PCanavelli
opened
4 months ago
3
File "abundance.h5" missing from salmon sample directory
#3743
fardellas
closed
5 months ago
0
Hisat 2 error
#3742
Maria6642
opened
6 months ago
1
remove Python2 crumbs
#3741
a-detiste
opened
7 months ago
4
KeyError: 'MB1' ' returned non-zero exit status 1. when running scRNA-seq analysis for indropv3
#3740
juychen
opened
9 months ago
1
MultiQC error: cannot import name 'TypedDict' from 'typing'
#3739
VerenaPass
opened
9 months ago
2
add recommonmark module to readthedocs conf
#3738
naumenko-sa
closed
11 months ago
0
return submodules to readthedocs config
#3737
naumenko-sa
closed
11 months ago
0
add os and python to readthedocs yml
#3736
naumenko-sa
closed
11 months ago
0
exclude submodules in readthedocs build
#3735
naumenko-sa
closed
11 months ago
0
Save meetas work
#3734
naumenko-sa
closed
11 months ago
0
deprecate SC user story
#3733
naumenko-sa
closed
11 months ago
0
updating atac user story documentation
#3732
mistrm82
closed
11 months ago
0
ATAC-seq pipeline: what exampley is ready.bam?
#3731
naumenko-sa
closed
11 months ago
1
ATAC-seq
#3730
naumenko-sa
opened
11 months ago
0
Error upgrading bcbio-nextgen to add the genome and an aligner
#3729
moutazhelal
opened
12 months ago
0
vcfanno bug
#3728
wangpenhok
opened
1 year ago
0
resources assignment when perform parallel jobs
#3727
wangpenhok
opened
1 year ago
1
Anaconda channels
#3726
gis-nlsim
closed
11 months ago
1
miRBase old versions are no longer available
#3725
rchekaluk
closed
11 months ago
0
Files are no longer available on miRBase ftp site
#3724
rchekaluk
closed
11 months ago
0
miRBase download files are not compressed
#3723
rchekaluk
closed
11 months ago
0
miRBase genomes URLs have changed
#3722
rchekaluk
closed
11 months ago
0
miRBase certificate error
#3721
rchekaluk
closed
11 months ago
0
mm10 Genome Installation Error
#3720
daisysdan
opened
1 year ago
0
bcbio run not running samples in parallel
#3719
toddcreasy
closed
1 year ago
2
Can bcbio customize the user-defined GLIBC directory?
#3718
lovebaboon1989
opened
1 year ago
7
Does bcbio support smooth restart when a job is stopped?
#3717
lovebaboon1989
closed
1 year ago
2
Error during alignment using STAR
#3716
tdelisper
closed
11 months ago
2
umi stat
#3715
dauss75
opened
1 year ago
1
Failed in generating genome files
#3714
gis-nlsim
closed
1 year ago
1
On torque cluster, piped_bamprep "result not ready, cannot allocate memory" error
#3713
fouriejoubert
opened
1 year ago
1
Installing bcbio in macos in VM fails
#3712
GACGAMA
closed
1 year ago
1
Docker version of Bcbio
#3711
Adrian-Zet
opened
1 year ago
0
Fail to build Normal DB in PureCN pipeline
#3710
WuRAFY
opened
1 year ago
0
Only header but no mutations were present in varscan vcf output.
#3709
EvaPang2022
opened
1 year ago
0
IBM Power9 (ppc64le) support
#3708
um-pdavila
closed
1 year ago
1
Error installing hg38 dbsnp data: ERROR 404: Not Found
#3707
amizeranschi
opened
1 year ago
3
tabix error on effects-ploidyfix.vcf.gz
#3706
hongenxu
opened
1 year ago
0
Wrong bcbio-nextgen versioned pinned in requirements file for v1.2.2 and later
#3705
asee-imagia
opened
1 year ago
1
Question on parrallelization with callable regions
#3704
nvnieuwk
closed
1 year ago
2
Update BDGP6-resources.yaml
#3703
naumenko-sa
closed
1 year ago
0
Java error after fresh install of v1.2.9
#3702
lindakohn
opened
1 year ago
5
Question: callable regions generation
#3701
matthdsm
closed
1 year ago
2
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