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According to the investigation of OOM(https://github.com/icgc-argo/workflow-roadmap/issues/136), we will implement the re-try mechanism for Sanger wgs variant calling step as what Alex suggested.
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OpenSSF Projects cannot lag in signing the Charter and the Contributor Agreement (CA). These items confirm their onboarding as projects of the OpenSSF. Without these documents these projects have no o…
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Lims Issue
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For definitions of headings below see [Basic Concepts](https://atlas.scilifelab.se/infrastructure/lims/basic_concepts/).
**Work Flow:** TWIST v8
**Protocol:** Pre Processi…
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Hi, do you think that this method could be applied to high coverage >80x whole genome sequencing? Also will this only identify fusions from simple rearrangements or also from multi-breakpoint events?
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How does it take to run longranger wgs on a mouse genome?
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Tried to run dragmap, the commands are:
` dragen-os -r /paedyl01/disk1/yangyxt/indexed_genome/hg19 -1 /paedyl01/disk1/yangyxt/wgs/40_samples_help/download_data/clean/TCA-082A/forward_read/TCA-082A-54…
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The output paths to the files created by the CramQC stage of the Seqr Loader and Large Cohort pipelines are organised with a [function](https://github.com/populationgenomics/production-pipelines/blob/…
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Hi,
I'm having an issue with the "selectedPathways" argument in the oncoplot function, when using my own user-defined pathways. I either get the error below (with code):
```
oncoplot(maf = wgs.m…
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Hi Juliana, Thank you for sharing your genetic QC pipeline—it has been incredibly helpful. I have a question regarding whole-genome sequencing (WGS) data. Due to its large size, it's often to separate…
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Being a list of features/requirements from different groups within Protocol Labs required to support the Package Managers usecase.
## What is the Package Managers use case?
Our goal is to encour…