nghiavtr FuSeq_WES issues - Githubissues

nghiavtr / FuSeq_WES

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Issue with the output and help required to interpret it

#12 alkasingh21 opened 8 months ago
3
Fix instructions, replace placeholder text in createSqlite.R with the actual file name

#11 EthanNelson-Moore closed 1 year ago
0
error when trying to load ensmbl_paralogs_grch38.RData

#10 hvelab opened 1 year ago
1
install using biconda

#9 Smeds opened 1 year ago
1
fix: return results when there is no anti strand transcripts

#8 jonca79 closed 1 year ago
2
how to extract the supported bam files? and can it generate the VCF files of the supported fusion?

#7 genebial opened 1 year ago
2
Paralog database for hg38

#6 deniando opened 2 years ago
1
Is there a way I can exactly get genomic coordinate of the fusion breakpoint(left and right), the output(FuSeq_WES_SR_fge.txt or FuSeq_WES_SR_fge_fdb) contains a transcript range rather than the exact breakpoint of the fusion genes. Alternatively, how can I get exon number(or say ranks) or even intron number in output itself?

#5 spKrispy opened 2 years ago
4
How to interpreat the output data

#4 dhwani2410 opened 2 years ago
1
TypeError: _open() got an unexpected keyword argument 'threads'

#3 dhwani2410 opened 2 years ago
2
Documentation of Outputs and BEDPE

#2 spKrispy opened 2 years ago
2
Application to WGS

#1 mflevine opened 2 years ago
1