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### Description of the bug
When I run nf-core/mag with the
```
--host_fasta_bowtie2index "/path/to/references/"
```
The bowtie log file gives me the following warning
```
Warning: Output file './…
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We have around 70 odd individual builds (Dotnet, Angular) that use common projects in respective build solutions as references. We don't want to analyze these common projects all the time for each & e…
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This issue exists to let you know that we are about to monitor the builds
of the LLVM (v20.0.0, llvm/llvm-project@ 032014e) snapshot for 20241116.
At certain intervals the CI system will update th…
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I am running TEfinder to find insertions in a large bam file 18GB however the analysis pipeline stops at the Picard step with a message Runtime.totalMemory()=2097152000. I am running the analysis in H…
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### Jenkins and plugins versions report
pasted
Environment
```text
Jenkins: 2.387.1
OS: Linux - 6.1.18-200.fc37.x86_64
Java: 11.0.18 - Eclipse Adoptium (OpenJDK 64-Bit Server VM)
…
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Idle thought while reviewing #302 -- given that our data pipeline is reliant on specific checkpoints of CivicPy data, it might be helpful to write a small function or two that fetches the cache pickle…
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The lightcurves of LSQ13cwp, LSQ13cmt, iPTF13dkl are 0.5 mag discrepant between the DM Science Pipelines analysis and the published R! lightcurves.
1. [x] Generate lightcurves of the DR1 calibratio…
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The test results must be archived by the integration job
The pipeline lacks visualization of any kind of metrics
* static analysis
* documentation check
* tsak scanner viz
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From the imagery coordination coordination BOF at sotm this past weekend, @pratikyadav @cgiovando and I are going to take a first pass at the following:
Develop a task flow analysis for the imagery …
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Fix warnings in CI build pipeline:
- [ ] DeprecationWarning: Converting `np.inexact` or `np.floating` to a dtype is deprecated. (histogrammar)
- [ ] FutureWarning: In a future version, DataFrame.m…