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As DNA extraction is such a central point in contemporary plant research, I would like to draw attention to an issue that has been bugging me for some time. Not sure here is the right place to mention…
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scripts/kraken-build --build --db custom_db/
Kraken build set to minimize disk writes.
Creating k-mer set (step 1 of 6)...
Found jellyfish v1.1.11
Hash size not specified, using '46074880'
K-me…
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Hi,
i am trying your software on the kallisto branch (which seems very promising) and have a couple of questions:
- at the moment, the need to build and load in memory a kallisto index for train…
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Pall,
I have a bacterial genome 2866389 bp (2.8 Mbp) which is finished/closed and a set of Illumina PE reads to 90x coverage.
I ran the following for Q = 20, 10 and 0 and then put it through `KmerSt…
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I tried running your Prophage_Tracer for the first time today and I got this error
awk: cmd. line:1: fatal: division by zero attempted
I followed your directions to index with bwa, then map with b…
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I want to use the ideal table for the parasite I am working on but it is not supported. I could not find where the functions inherit the table to modify the code.
Would it be possible and simple t…
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Hi,
I intended to enrich Saccharomyces cerevisiae in ZymoBIOMICS mock microbial community. Even channels are treated as the adaptive group by setting “—even” and odd channels as control. After runnin…
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Summary of request: Modify the information in an existing ROR record
Update record:
Name of organization: Bacterial Virulence and Chronic Infections
ROR ID: https://ror.org/044jxv425
Which part …
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**Versions**
poppunk 2.6.0
pp-sketchlib 2.1.0
**Command used and output returned**
Running poppunk in a conda environment in WSL2-Ubuntu
1206 genomes from one bacterial species (had already…
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Dear @ArtRand,
I used ```dorado aligner``` as you suggested to map each bam file containing information about methylation using nanopore sequencing. I then run ```modkit pileup``` on these bam file…