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B-UMMI
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chewBBACA
BSR-Based Allele Calling Algorithm
GNU General Public License v3.0
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Can I get STs with cgMLST? (cgST)
#208
juanjo255
closed
3 weeks ago
2
keep pyrodigal output in gff
#207
juanjo255
opened
4 weeks ago
2
Feature Request: Add Function to Generate MSA FASTA File Using `results_allele.tsv`
#206
vascokarla
opened
1 month ago
3
AlleleCallEvaluator Issue - KeyError
#205
arshdeep1k
closed
1 month ago
2
chewbbaca_AlleleCallEvaluator bug
#204
mcanses
opened
2 months ago
6
Problem installing chewBBACA on Windows
#203
harayalen
opened
2 months ago
1
AlleleCall error : updating hash tables
#202
LudoPoire
closed
2 months ago
2
Typo in tutorial? Wrong version to install with conda
#201
melparker101
closed
3 months ago
3
Can I use or add a different translation table for the genetic code (working with parasites)?
#200
azmigueldario
opened
3 months ago
6
AlleleCall - Error in translate_fasta and protein_alignment
#199
jdaeth274
closed
3 months ago
3
AlleleCallEvaluator error: cgMLST is composed of 0 loci
#198
jgugliel
closed
3 months ago
5
AlleleCall issue - Error on select_representatives, KeyError
#197
0mician
opened
6 months ago
1
Blast Local IDs too long?
#196
cizydorczyk
closed
5 months ago
2
AlleleCall issue - Determining BLASTp self-score for each representative...
#195
daraneda96
opened
7 months ago
4
CreateSchema - ValueError: not enough values to unpack (expected 2, got 1)
#194
daraneda96
closed
7 months ago
4
Coding strand convention
#193
a-damC
closed
7 months ago
2
Creating conda environment throws error with the latest [3.3.2] version
#192
anwarMZ
closed
2 months ago
2
IndexError
#191
kayobianco
closed
2 months ago
2
print invalid names for simpler warnings which were skipped/missed
#190
chrisgulvik
closed
8 months ago
2
Invalid alleles and invalid genes
#189
lskatz
closed
2 months ago
9
Create git tag for v3.2.0 release
#188
alanorth
closed
1 year ago
2
File not found because of wrong path AlleleCall
#187
mlarjim
closed
1 year ago
3
3.3.0 AlleleCall reports missing files
#186
karlkashofer
closed
11 months ago
2
Newest Pyrodigal breaks chewBBACA
#185
karlkashofer
closed
11 months ago
2
Documentation issue
#184
karlkashofer
closed
11 months ago
4
Add Klebsiella pneumoniae ptf
#183
ryanjameskennedy
closed
1 year ago
5
Ecountering an issue when running AlleleCall
#182
kamivain
opened
1 year ago
9
Chewbbaca visualization output
#181
davidmaimoun
opened
1 year ago
4
Did the arg `--fr` get dropped?
#180
russellsmithies
closed
1 year ago
3
Add pyrodigal for gene prediction
#179
rfm-targa
closed
1 year ago
0
Add AlleleCallEvaluator module
#178
rfm-targa
closed
1 year ago
0
INF not reporting
#177
jtrew89
closed
1 year ago
3
Issue when using AlleleCall with a large number of genomes
#176
ccrinconc
closed
1 year ago
3
Adapting external schema for Salmonella enterica from cgmlst.org
#175
omegatro
closed
1 year ago
2
Improving input file detection.
#174
rfm-targa
closed
1 year ago
0
Error: invalid start byte
#173
eam12
closed
1 year ago
11
Updates and fixes for SchemaEvaluator
#172
rfm-targa
closed
1 year ago
0
No possibilty to turn off gene prediction completly
#171
TorHou
closed
1 year ago
2
If the input is the eukaryotic group, how can I get the training file?
#170
alienn233
closed
1 year ago
1
Issue with fasta input files
#169
hkaspersen
closed
1 year ago
3
Duplicate alllele id's inserted into the database
#168
jrober84
closed
1 year ago
2
Get the closest profile
#167
mweberr
opened
1 year ago
1
Bump webpack from 5.4.0 to 5.76.0 in /CHEWBBACA/SchemaEvaluator/resources/schema_evaluator_main_react_scripts
#166
dependabot[bot]
opened
1 year ago
1
Bump webpack from 5.4.0 to 5.76.0 in /CHEWBBACA/SchemaEvaluator/resources/schema_evaluator_individual_reports_react_scripts
#165
dependabot[bot]
opened
1 year ago
1
AttributeError: 'NoneType' object has no attribute 'seq'
#164
famiji
closed
1 year ago
5
Error when calling chewBBACA AlleleCall with --cds-input flag
#163
TorHou
closed
1 year ago
4
how should I handle the column headers when I upload my "results_alleles.tsv" to Phyloviz online
#162
famiji
closed
1 year ago
1
How can I obtain the file "excluded_genomes.txt"? And how was the file "GBS_assembly_stats.tsv" generated? Thank you for your response.
#161
yolo2fh
closed
1 year ago
2
Errno 2 FileNotFoundError : both for CreateSchema and AlleleCall
#160
ainus1022
closed
1 year ago
4
SchemaEvaluator: html output files for individual gene cannot be displayed in browser
#159
artmisk13
closed
11 months ago
9
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