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**Describe the solution you'd like**
Input: The algorithm takes as input a bipartite graph G, where the vertices are divided into two disjoint sets, often referred to as U and V.
Initialization: I…
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Hi,
I tried scoring a single consensus tree with `CCPscore` (ALE version from commit 6444e6e, 2022/05).
It returns -inf. This looks like an overflow, so I tried downsampling my list of trees to …
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First a couple of notes:
* `main_loop` should not need to iterate more than once. It claims `solve_metas` can add new edges to the equality graph, but only if it finds `Constraint::Equals`; a single …
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I wish to show the phylogenetic relationship among some genes in HOGs using the corresponding gene tree in Resolved Gene Trees Directory, but I noted there are not bootstrap value on their nodes. Will…
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do you have somewhere description for bimodularity
per
def test_bimodularity(self):
biadjacency = star_wars()
labels_row = np.array([0, 0, 1, 1])
labels_col = np.a…
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Sec 3.5 of the R-MAT paper (https://www.cs.cmu.edu/~christos/PUBLICATIONS/siam04.pdf) documents an option for generating a bipartite graph by specifying the number of node on each dimension.
As fa…
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### 🚀 The feature, motivation and pitch
The ["Understanding Pooling in Graph Neural Networks"](https://arxiv.org/abs/2110.05292) paper introduces a simple framework to unify (most) graph pooling ap…
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**Describe the bug**
- When using an igraph object with BIMPLA it raises a **KeyError**: the library needs a "biparatite" arg for partitions whereas igraph uses "type" as default arg.
- Even with th…
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### As we have covered GitHub, what platform we should cover next? 🤔
Do add a comment here and let us know 💫
## Platforms Decided
+ Twitter 🐥
+ LinkedIn 💼
+ Kaggle 🧠
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![IHaveAnIdeaHom…
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## 1. Previous Work
Setwise NGD for `semmeddb`: https://github.com/biothings/pending.api/issues/79
## 2. `semmeddb2` Document Structure Change
Previously in `semmeddb`, **each predication is …