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Hi,
is SNPsplit incompatible to minimap2, as it is mentioned that bwa is not compatible?
Thank you in anticipation
Best regards
Kristian
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I'm trying to use scheemasheet with `attributes`, e.g.:
```
Proposed Field Class Name
> attributes class
tissue sample label tissue sample
amplified cDNA label amplified cdna
```
and I'm g…
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I'm trying to run MuPeXI pipeline with test data, but there is something wrong and I can't fix it.
The command line is:
`./MuPeXI.py -v ./data/example.vcf -e data/example_expression.tsv -a HLA-A01…
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A collaborator for the [CMG_Muntoni_External_Genome](https://seqr.broadinstitute.org/project/R0536_cmg_muntoni_external_gen/project_page) project discovered that no variants are returned when `TF bind…
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Hi,
I kindly would like to ask a question: I would like to map my direct RNA-seq reads (generated by nanopore sequencing) to genome (DNA). I am somewhat confused if minimap2 supports this, as norma…
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https://mp.weixin.qq.com/s/fC0mGgEmAqRdkvN6rfNz6Q
ixxmu updated
3 months ago
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I have a annotated VCF I split using bcftools split-vep
the cDNA, CDS en protein positions in the CSQ are:
`|8586-8599/9231|8523-8536/8835|2841-2846/2944 |`
The split vep output for those field…
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It's been quite a lot of time since the first generation of RDNA cards have been released and still it seems to be the only cards generation without official ROCm support. Is there any plan to support…
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https://mp.weixin.qq.com/s/45BxeCbATEUf2QfSu-trcw
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Dear Heng,
I'm currently using minimap2 to align Nanopore cDNA reads to the human genome using following parameters:
`minimap2 -ax splice -Y -s 40 --secondary=no --junc-bed`
I noticed that, the…