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FelixKrueger
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SNPsplit
Allele-specific alignment sorting
http://felixkrueger.github.io/SNPsplit/
GNU General Public License v3.0
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Question about allele_flagged.bam and genome1.bam/genome2.bam files
#82
xixueyu96
closed
1 month ago
2
About singletons
#81
ddepierre
opened
1 month ago
1
trouble with BS-Seq
#80
lucacozzuto
closed
1 month ago
9
Question about assigning 'unassignable' reads
#79
RobertBaird
opened
4 months ago
2
How to define high-confidence SNPs?
#78
Ulixmanna
closed
5 months ago
1
Zero segregation for scRNAseq
#77
GangLiTarheel
closed
1 year ago
5
Bowtie1 as the aligner of Bismark
#76
lelesama
closed
1 year ago
1
Updating docs and Switch over to v8 MGP annotation
#75
FelixKrueger
closed
1 year ago
0
Getting 0 reads processed
#74
yonniejon
closed
1 year ago
11
Tutorial for SNPsplit
#73
yonniejon
closed
1 year ago
2
Update SNPsplit to v8 release of the Mouse Genomes Project
#72
FelixKrueger
closed
1 year ago
2
Genome preparation:129S1 (paternal) mice × B6D2F1/J (F1 of C57BL6NJ × DBA2J, maternal) mice
#71
lelesama
closed
1 year ago
7
minimap2
#70
kullrich
closed
1 year ago
4
Using SNPsplit for single cell data
#69
taolincj
closed
1 year ago
4
SNP level counting showing bi and mono allele count for same gene
#68
luckysardar
closed
1 year ago
2
high reads did not contain one of the expected bases at known SNP positions
#67
ChenfuShi
closed
1 year ago
7
single end mode not working
#66
rberrens
closed
1 year ago
2
Mask reference genome for human genome build 37 using bisulphite fasta file
#65
nmfad
closed
1 year ago
6
Why I can't split bisulfite data ?
#64
chaoyang666
closed
1 year ago
3
How to phase Hi-C data using SNPs
#63
hmyh1202
closed
1 year ago
2
N-masking human genome
#62
parichitran
closed
2 years ago
2
single-end mode does not work
#61
shanwai1234
closed
2 years ago
2
0-indexed or 1-indexed for the SNP output?
#60
sshen82
closed
2 years ago
2
SNPsplit for mouse RNA-seq data
#59
Lu-103
closed
1 year ago
8
Using SNPsplit to analysis Bisulfite-Seq data in plant
#58
GatorShan
closed
2 years ago
2
Two much variation in the Two strain specific reads percentage
#57
luckysardar
closed
2 years ago
1
add STAR in PG paired detection
#56
WardDeb
closed
2 years ago
3
Nmasked human genome
#55
fanghe0720
closed
2 years ago
1
Which reference genome I have to use it for genomepreparation
#54
luckysardar
closed
2 years ago
7
SNP split for the hybrid cross two different strains
#53
Hemantcnaik
closed
2 years ago
9
Error with SNPsplit_genome_preparation
#52
jprippe
closed
2 years ago
2
Using the --full_sequence genome
#51
ezecalvo
closed
2 years ago
2
Running SNPsplit in parallel
#50
Grishnahk
closed
2 years ago
3
Why all my reads are unassigned
#49
skelviper
closed
3 years ago
2
Support for different order of INFO keys and value
#48
wwang-chcn
closed
3 years ago
1
SNPsplit_genome_preparation processing error on custom vcf and genome
#47
wwang-chcn
closed
3 years ago
5
Fix v7_MGP option
#46
icebert
closed
3 years ago
1
Some questions about working on plant species
#45
CrazyHsu
closed
2 years ago
2
How to use the SNPsplit for higher version of VCF
#44
Hemantcnaik
closed
2 years ago
11
BS-seq about SNP_split
#43
zhangaicen
closed
3 years ago
3
Look at file type auto-detection
#42
FelixKrueger
closed
3 years ago
1
Question about genome preparation for C57BL/6J x JF1/Ms hybrid mouse
#41
pplaw
closed
2 years ago
11
SNP removal in Bismark
#40
pubudumanoj
closed
3 years ago
1
PrepareGenome input
#39
nservant
closed
4 years ago
2
prepareGenome
#38
nservant
closed
3 years ago
6
Add option to skip sorting
#37
FelixKrueger
closed
4 years ago
0
'S' CIGAR operation not allowed
#36
brainfo
closed
3 years ago
4
SNP value column in input snp file correspond to which information in vcf format files?
#35
brainfo
closed
4 years ago
1
STAR provides only unassigned reads
#34
yeroslaviz
closed
4 years ago
22
C>T SNPs preventing the assignment
#33
GuidoBarzaghi
closed
3 years ago
3
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