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I am running `regenie_v3.0.3.gz_x86_64_Centos7_mkl` on an HPC cluster running `CentOS Linux release 7.8.2003 (Core)`. If I try to run step2 using the "--apply-rint" option I get the following error:
…
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Debian and derivatives (like ubuntu) use -dev for developer packages.
So for instance OpenMPI-1.6.4-GCC-4.7.2.eb mentiones:
osdependencies = ['libibverbs-devel']
Which fails. Not sure if it would b…
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### Description of the bug
Hi,
I am running Sarek-Mutect (tumor only) on some samples. I am getting an error that there was no index provided for the germline resource. But I am providing the --ge…
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### Bug summary
subfigures:
Errors, fails:
1) .clabel(cConH, inline=True,inline_spacing=0, fontsize=2.6) error:
"object has no attribute '_cachedRenderer' "
2) cb.set_label(label='ab…
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**What happened**:
My HPC has 32 CPUs. Seting dask config with pool=Pool(32), or xx.compute(scheduler='processes', num_workers=32) ,while dask only use 10 CPUs actually
![dask_cpu](https://user-…
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* **What is the current behaviour?**
* The converted singularity image does not run on an HPC cluster with CentOS 6.10 (kernel ver: `2.6.32`), posting the error: "`KERNEL TOO OLD`", indicat…
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Hello!
Description
===========
It seems librdkafka doesn't support SASL re-authentication (https://cwiki.apache.org/confluence/display/KAFKA/KIP-368%3A+Allow+SASL+Connections+to+Periodically+Re-A…
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Hello,
I was trying to enable zstd on Centos 7 system without zstd installed system-wide. So I have put it in:
/home/username/soft
and tried:
```
./configure --prefix=/home/username/soft …
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I have checked the following places for your error:
- [X] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [X] [nf-core/sarek pipeline documentation](https://nf-co.re/n…
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**Describe the bug**
Firstly thank you so much for offering PGAP!
I downloaded the latest 2022-04-14.build6021 following https://github.com/ncbi/pgap/wiki/Quick-Start .
I ran it on a Linux HPC clus…