MICA-MNI micapipe issues

MICA-MNI / micapipe

micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

http://micapipe.readthedocs.io

GNU General Public License v3.0

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issues

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B0 threshold is not a valid integrer: DEFAULT

#122 sue192 opened 10 hours ago
0
Failed to pull micapipe:v0.1.5

#121 jiazhuotao closed 2 weeks ago
0
Module QC failed

#120 zhaopluseins opened 1 month ago
4
Issue encountered in partition mapping during FC computation using micapipe

#119 logicxie opened 2 months ago
0
stuck at initialisation

#118 Liz-Yuanxi-Lee closed 2 months ago
0
proc_surf does not fully run with externally processed fast/freesurfer

#117 araikes opened 2 months ago
0
proc_func does not proceed

#116 KobaCemal opened 3 months ago
1
Error Encountered During dwifslpreproc Execution

#115 swwalsh opened 3 months ago
0
FIXED func mask overestimates, REMOVED filtering for multi-echo

#114 shyu2kko opened 3 months ago
0
remove highpass filter for multiecho

#113 shyu2kko closed 3 months ago
0
Proc_structural [ ERROR ]..... Subject xxx doesn't have T1_nativepro

#112 nichy-consortium opened 4 months ago
1
Update with newer FSL and eddy_cuda10.2?

#111 tannerjared opened 4 months ago
0
Stuck at proc_func

#110 hoptman opened 5 months ago
5
"RepetitionTime is missing in"

#109 hoptman closed 5 months ago
4
Atlas-defined time series output

#108 benjaminsipes closed 5 months ago
1
"SINGLE" BIDS session error with proc_func

#107 benjaminsipes closed 5 months ago
1
FC missing ROIs for all parcellations

#106 kbatista-gr opened 7 months ago
2
[WIP] Deployment of HTML documentation on alternative webhost

#105 blaisb opened 7 months ago
0
[FIX] incorrect atlas name for glasser in docs

#104 amnsbr closed 8 months ago
2
Bugs report for ICA-FIX dependency and ...

#103 gourdchen opened 8 months ago
5
Adding translation step improves ANTs registration in some datasets

#102 MarkNelson86 closed 5 months ago
1
How to Specify the data directory?

#101 BrianYahoo closed 8 months ago
2
realpath No such file or directory

#100 BrianYahoo closed 5 months ago
1
ERROR ]..... B0 threshold is not a valid integrer: DEFAULT

#99 hoptman closed 5 months ago
3
volumetric tSNR calcs

#98 jordandekraker closed 8 months ago
1
Volumetric tSRN

#97 jordandekraker closed 5 months ago
1
Running micapipe after docker pull

#96 LPNC-LANG closed 9 months ago
15
FastSurfer tries to run singularity w/in containerized call and fails

#95 bcmcpher closed 10 months ago
4
Warning message

#94 araikes closed 9 months ago
1
QC_subj terminates early without all outputs

#93 araikes closed 9 months ago
3
Loading prerun fastsurfer

#92 araikes closed 11 months ago
2
Issue in set-up

#91 marcellamontagnese closed 9 months ago
11
Mismatch between "dependencies" and software versions

#90 araikes closed 11 months ago
1
Fastsurfer not running in containerized micapipe v0.2.2

#89 araikes closed 11 months ago
1
-QC_subj does not produce QC report for dwi due to outdated json path

#88 ajschadler12 closed 11 months ago
1
-force flag on proc_dwi deletes proc_structural through post_structural output

#87 ajschadler12 closed 11 months ago
1
touch-ups to make things cleaner

#86 jordandekraker closed 11 months ago
0
Revert "equipotential surfaces through WM"

#85 jordandekraker closed 11 months ago
0
equipotential surfaces through WM

#84 jordandekraker closed 11 months ago
1
Faild using docker pull for install.

#83 ZhyGao closed 1 year ago
1
-SC does not produce connectome text files

#82 araikes closed 1 year ago
3
-QC fails

#81 araikes closed 1 year ago
5
autoTracts bundled with SC fails

#80 araikes closed 1 year ago
1
Inquiry about Discrepancies in Schaefer 200 Parcellation Labels from different toolboxes

#79 WolkeTian closed 5 months ago
4
Inquiry Regarding Dimension of Matrix Data in micapipe Structural Connectome Module (resolved by email)

#78 WolkeTian closed 1 year ago
0
Unable to pull version 0.2.0 from docker

#77 AdamPariag closed 1 year ago
3
$dwi_dns undefined

#76 MarkNelson86 closed 1 year ago
2
micapipe_check_dependency command not found

#75 MarkNelson86 closed 1 year ago
2
removes extra output file

#74 jordandekraker closed 1 year ago
0
patch for aparc-a2009s and general robustness

#73 jordandekraker closed 1 year ago
0