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MICA-MNI
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micapipe
micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below
http://micapipe.readthedocs.io
GNU General Public License v3.0
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another missing label file
#72
jordandekraker
closed
1 year ago
0
Func surf patch
#71
jordandekraker
closed
1 year ago
0
added support for aparc-a2009s FC
#70
jordandekraker
closed
1 year ago
0
func sampling on fsLR
#69
jordandekraker
closed
1 year ago
3
Dev surfmaps
#68
jordandekraker
closed
1 year ago
0
Fix missing file paths in 02_proc-dwi and 03_SC
#67
araikes
closed
1 year ago
1
Alternative phase encoding schemes
#66
araikes
closed
1 year ago
2
Final LUT Entry for Schaefer 1000?
#65
benjaminsipes
closed
5 months ago
2
Bug: mrdegibbs (and dwifslpreproc later) fails in 0.1.5
#64
araikes
closed
1 year ago
3
update Dockerfile
#63
PeerHerholz
closed
1 year ago
0
Include option to disable bvalue scaling
#62
ajschadler12
closed
1 year ago
4
T1w and T2w suffixes
#61
jordandekraker
closed
1 year ago
1
Add a CI workflow to run tests and and test the docker build regularly
#60
Remi-Gau
opened
1 year ago
1
building micapipe in docker on MacOS M1
#59
slusna-dominika
closed
1 year ago
1
Cannot persuade version 0.1.4 to run proc_structural
#58
araikes
closed
1 year ago
6
Rerun `-proc_dwi` with `-autotract`, fails because TCK is not regenerated.
#57
ajschadler12
closed
1 year ago
1
res-fMRI FC - missing ROI
#56
Liz-Yuanxi-Lee
closed
1 year ago
1
Results from auto_tract
#55
HEEHWANWANG
closed
1 year ago
2
Incorporate FastSurfer
#54
thomshaw92
closed
1 year ago
2
ReadTheDocs Singularity issues/errors
#53
thomshaw92
closed
1 year ago
1
MPC surface ordering distorted
#52
rb643
closed
1 year ago
3
From rsfMRI to nativepro space
#51
jordandekraker
closed
1 year ago
0
Mica reports that it couldn't find any dwi file
#50
Neuro-en
closed
1 year ago
4
fschfiletype from fsl v6.0.0 destroys data when working with float32 or uint16 T1w images. Upgrading to v6.0.5 fixes issue.
#49
ajschadler12
closed
1 year ago
2
Two resting state scans: before and after TMS
#48
dkp
closed
1 year ago
3
Alternative distortion correction options
#47
dkp
closed
1 year ago
2
Use existing freesurfer output from fmriprep or qsiprep
#46
dkp
closed
2 years ago
1
example docker command in documentation incorrectly specifies freesurfer license
#45
dkp
closed
1 year ago
2
[ENH] Add tedana support.
#44
ReinderVosDeWael
closed
2 years ago
0
Running micapipe_cleanup with Docker
#43
jinseo0904
closed
1 year ago
9
2 "missing" files in QC report
#42
mrribbits
closed
1 year ago
2
Incorrect bvalues returned with processed multishell sequence.
#41
ajschadler12
closed
2 years ago
2
MPC input
#40
hoptman
closed
2 years ago
1
Missing surface snapshots in QC report
#39
mrribbits
closed
1 year ago
5
Running micapipe_cleanup and other scripts
#38
mrribbits
closed
2 years ago
1
'Subject 01 doesn't have T1_nativepro warp to MNI152.'
#37
roryjpiper
closed
1 year ago
2
Conte69 not generated from proc_structural
#36
roryjpiper
closed
1 year ago
2
conte69 surface problems
#35
hoptman
closed
2 years ago
2
Missing commas in lut_aparc_mics.csv prevent automatic parsing
#34
MarkNelson86
closed
2 years ago
1
Add option to use the the ss3t_csd_beta1 algorithm for single-shelled data.
#33
ajschadler12
closed
1 year ago
1
Independent DWI sequences are concatenated in final output when processed together.
#32
ajschadler12
closed
1 year ago
2
Ran commands successfully but no results files generated
#31
jhx9327
closed
1 year ago
1
draft detailed installation instructions
#30
PeerHerholz
closed
2 years ago
0
-proc_rsfmri states "couldn't find 001 main rsfMRI scan: ls"
#29
ClaireSmid
closed
2 years ago
1
Supply container for HPCs with older kernel versions
#28
ajschadler12
closed
2 years ago
1
frMRI QC, add SNR image of the clean timeseries and surface visualization of the YEO networks
#27
rcruces
closed
1 year ago
1
Post_structural runs with errors - cannot find FreeSurfer license?
#26
ClaireSmid
closed
2 years ago
2
subject_QC: Sankey diagram of DWI appears to be incomplete (orange) but it's not
#25
rcruces
closed
1 year ago
2
adding task fmri stream / 3dDeconvolve / to micapipe
#24
neuroimagingdatascience
closed
1 year ago
3
adding JuBrain parcellation
#23
neuroimagingdatascience
closed
5 months ago
4
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