MICA-MNI micapipe issues

MICA-MNI / micapipe

micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

http://micapipe.readthedocs.io

GNU General Public License v3.0

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issues

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Missing commas in lut_aparc_mics.csv prevent automatic parsing

#34 MarkNelson86 closed 2 years ago
1
Add option to use the the ss3t_csd_beta1 algorithm for single-shelled data.

#33 ajschadler12 closed 1 year ago
1
Independent DWI sequences are concatenated in final output when processed together.

#32 ajschadler12 closed 1 year ago
2
Ran commands successfully but no results files generated

#31 jhx9327 closed 1 year ago
1
draft detailed installation instructions

#30 PeerHerholz closed 2 years ago
0
-proc_rsfmri states "couldn't find 001 main rsfMRI scan: ls"

#29 ClaireSmid closed 2 years ago
1
Supply container for HPCs with older kernel versions

#28 ajschadler12 closed 2 years ago
1
frMRI QC, add SNR image of the clean timeseries and surface visualization of the YEO networks

#27 rcruces closed 1 year ago
1
Post_structural runs with errors - cannot find FreeSurfer license?

#26 ClaireSmid closed 2 years ago
2
subject_QC: Sankey diagram of DWI appears to be incomplete (orange) but it's not

#25 rcruces closed 1 year ago
2
adding task fmri stream / 3dDeconvolve / to micapipe

#24 neuroimagingdatascience closed 1 year ago
3
adding JuBrain parcellation

#23 neuroimagingdatascience closed 8 months ago
4
add nilearn to Docker image

#22 PeerHerholz closed 2 years ago
0
Nilearn dependency doesn't exist?

#21 alffajardo closed 2 years ago
2
Freesurfer license not found

#20 alffajardo closed 2 years ago
2
ANTs error

#19 ClaireSmid closed 3 years ago
1
Issue with naming of str_dwi_affine/mat_dwi_affine not consistent between 02_proc-dwi.sh and 03_SC.sh

#18 GabrielPelletier closed 3 years ago
1
update builds

#17 PeerHerholz closed 3 years ago
1
update builds

#16 PeerHerholz closed 3 years ago
0
nilearn is not listed in Dependencies

#15 GabrielPelletier closed 3 years ago
1
02_proc-dwi.sh fails to find nifti_capture.py

#14 GabrielPelletier closed 3 years ago
1
Add wildcard to default lookup of -dwe_rpe scan?

#13 GabrielPelletier closed 3 years ago
2
Rtd

#12 rcruces closed 3 years ago
0
update virtualization branch

#11 PeerHerholz closed 3 years ago
0
Recommend modify line 187 of 02_proc-dwi.sh to include threshold for B=0 shell values & to deal with non integer shell values

#10 MarkNelson86 closed 3 years ago
1
initial draft of virtualization

#9 PeerHerholz closed 3 years ago
0
Documentation recommends container, no container exists

#8 ikirker closed 3 years ago
2
Flags test

#7 rcruces closed 3 years ago
0
Line 153 in 01_proc-struc_volumetric allows run_first_all to be prematurely terminated

#6 MarkNelson86 closed 3 years ago
4
change output directory structure to be bids conform

#5 PeerHerholz closed 3 years ago
5
Add .circleci/config.yml

#4 rcruces closed 3 years ago
0
Add a Codacy badge to readme.md

#3 codacy-badger closed 3 years ago
0
Create LICENSE

#2 rcruces closed 3 years ago
0
Init

#1 ReinderVosDeWael closed 4 years ago
1