-
ATP-dependent chromatin remodeler activity
- [x] Ino80 fix product
- [x] SPAC1250.01 snf21 RSC-type complex ATPase Snf21
- [x] SPBP35G2.10 mit1 SHREC complex ATP-dependent DNA helicase subunit…
-
ftp://ftp.pombase.org/DATASET/
we can do this today.
we will decide what we want to include in the file names to recognise them.
and organism by "type of track" (biologically)
(or whatever w…
-
## Preferred term label
10x multiome
## Synonyms
Chromium Single Cell Multiome ATAC + Gene Expression
## Textual definition
Simultaneous profiling of gene expression and open chromatin …
-
I will probably look at the non-phase ones later but will need a reduced list
[exists_during.txt](https://github.com/pombase/curation/files/3748248/exists_during.txt)
-
add synonym
maintenance of transcriptionally poised chromatin
(@colinlog @pgaudet do we prefer this as a label? it gets the point across better that this is maintaining the chromatin and the *ab…
-
Currently, if I am not mistaken, GeneActivity() uses as forced default gene_name column from the genome annotation of chromatin assay as basis for gene nomenclature. This then causes problems with lab…
-
Reannotation, direct annotation to "chromatin remodelling"
open a ticket to update the pombase slim at GO (I will do this later as I might be able to use a better term)
-
The datasets in [Single cell transcriptional and chromatin accessibility profiling redefine cellular heterogeneity in the adult human kidney](https://cellxgene.cziscience.com/collections/9b02383a-9358…
-
* **PTHR ID & PTN node:**
PTN000468320
* **Sequences with problematic annotation (ID + gene/protein name):**
| GO:0048096 | chromatin-mediated maintenance of transcription | IBA …
-
Hi,
I had merged 16 different runs together in a multiome and for the ATAC peaks somewhere along the way it looks like I lost the genome information:
`all_runs@assays[["peaks"]]
ChromatinAssay…