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Hello! I am trying to integrate two sc datasets and am having issues with the integration. The datasets obtained are both pre-processed. Here is my code:
```
# making chromatin assay to ATAC seu…
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# 生信爱好者周刊（第 49 期）：面对知识孤岛，你会怎么处理？
这里记录每周值得分享的生信相关内容，周日发布。
本杂志开源（GitHub: [ShixiangWang/weekly](https://github.com/ShixiangWang/weekly)），欢迎提交 issue，投稿或推荐生信相关内容。
[「生信周刊讨论区（语雀）」](https://www.yuque…
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(it is not a typo as in https://github.com/timoast/signac/issues/1004)
I used the cellranger-atac-2.0.0 and analyzed some fastq files:
with:
reference_version=2020-A
mkref_version=cellranger-…
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## Preferred term label
ATAC-seq
## Synonyms
## Textual definition
ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) is a technique used in molecular biology to assess…
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Cdc73/Paf1 complex
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| cdc73, leo1, paf1, prf1, tpr1
https://www.ncbi.nlm.nih.gov/pubmed/28585565 Paf1C function in transcription through chromatin.
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Hello,
With @hattrill @ValWood and @RLovering we have produced a new generic subset for MF
It has much fewer binding terms (6, while the current has 16)
Terms in the new generic subset:
…
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Hello Mette,
I am writing to ask whether there is some hack that could make TOBIAS analysis start from bigwig files rather than BAMs. This could help me to directly work with TOBIAS when using some…
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As the modifications will move from BP to MF, I need an MF term to describe
the activity corresponding to this process:
GO:0071894 histone H2B conserved C-terminal lysine ubiquitination
Defini…
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https://mp.weixin.qq.com/s/ytY8aSejFkti531E1SkpTQ
ixxmu updated
2 years ago
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I've used sushi previously, with a custom formatted data frame (chr,start,stop,gene,score,strand) using the plotGenes function to create a plot of labeled enhancers. Is it possible to label these indi…