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```
BEAUti Generates the wrong taxa set for the starting tree
is for the full set.
I unlinked all partitions, but beauti generated just one combined taxa set.
Consequently beast fails.
…
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```
An unnecessary rate is generated
The non changing clock.rate is in the log
the "constant.popSize" parameter has an operator and is in the prior - wrong
bmPrior="true" - no longer correct, defa…
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```
For example, using a BSP number of groups > number of coalescences will trigger
a:
SEVERE: Fatal exception (email the authors)
Fatal exception (email the authors)
java.lang.IllegalArgumentExcept…
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```
I have performed the xml file using beauty 1.5.2. and I’ve constrained
a taxa in the same way that i have done using Beauty 1.4.8., after i
have calibrated the TMRCA prior using a normal distribut…
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It would be great to have a Function that represents one or more element from an existing Function, analogous to the array slice operation implemented in many numerical programming environments. This…
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```
What steps will reproduce the problem?
1. run a beast file with -seed 0
2.
3.
What is the expected output? What do you see instead?
Please use labels and text to provide additional information.…
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```
I have performed the xml file using beauty 1.5.2. and I’ve constrained
a taxa in the same way that i have done using Beauty 1.4.8., after i
have calibrated the TMRCA prior using a normal distribut…
-
```
The Laplace prior on coalescent growth rate is given with a default mean of
0.001. The mean should be zero to give equal probability of being positive or
negative.
```
Original issue reported …
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```
For example, using a BSP number of groups > number of coalescences will trigger
a:
SEVERE: Fatal exception (email the authors)
Fatal exception (email the authors)
java.lang.IllegalArgumentExcept…
-
```
If an MRCA of a taxon set is given a calibration with hard bounds, there is
nothing in the XML for simulating the tree to respect this constraint.
```
Original issue reported on code.google.com…