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beast-mcmc
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BEAUti frame is too large for low resolution projector or screen
#349
GoogleCodeExporter
closed
9 years ago
0
Windows BEAST exe <close> then <cancel>, window should NOT be closed
#348
GoogleCodeExporter
closed
9 years ago
4
change BEAUti default prior of ucld.stdv and kappa
#347
GoogleCodeExporter
closed
9 years ago
1
Show user a guide for an example of *BEAST or trait mapping file format
#346
GoogleCodeExporter
closed
9 years ago
1
BEAUti: user want to be able to edit trait value at any time
#345
GoogleCodeExporter
closed
9 years ago
1
Unit test test.dr.distibutions.GammaDistributionTest.testPdf is randomly failed
#344
GoogleCodeExporter
closed
9 years ago
2
NullPointerException after double-click discrete traits in Data Partition panel
#343
GoogleCodeExporter
closed
9 years ago
1
NullPointerException after cancelled 'Create New Trait' dialog
#342
GoogleCodeExporter
closed
9 years ago
1
Random local clock model Bug
#341
GoogleCodeExporter
closed
9 years ago
1
Spacing between elements in BEAUti generated XML
#340
GoogleCodeExporter
closed
9 years ago
2
GUI within scroll panes is just nasty
#339
GoogleCodeExporter
closed
9 years ago
4
Clock model panel is confusingly laid out.
#338
GoogleCodeExporter
closed
9 years ago
1
Creating a 'CONTINUOUS' or 'INTEGER' trait gives Discrete model of substitution in SiteModelPanel
#337
GoogleCodeExporter
closed
9 years ago
5
Subst model table in Site Models tab collapses to nothing when window is resized
#336
GoogleCodeExporter
closed
9 years ago
1
Guess trait values is available even when no trait defined.
#335
GoogleCodeExporter
closed
9 years ago
1
NullPointerException after cancelled 'Import Traits'.
#334
GoogleCodeExporter
closed
9 years ago
1
Unlink buttons are enabled even when only one partition is loaded.
#333
GoogleCodeExporter
closed
9 years ago
1
Add traits should allow any trait name to be given
#332
GoogleCodeExporter
closed
9 years ago
1
Help button on Traits panel in BEAUti seems to do nothing
#331
GoogleCodeExporter
closed
9 years ago
1
[deleted issue]
#330
GoogleCodeExporter
closed
9 years ago
0
Suggest a standard demographic log file format
#329
GoogleCodeExporter
opened
9 years ago
5
Generating very long default value and bound arrays for parameters
#328
GoogleCodeExporter
closed
9 years ago
2
BEAUTI fails to unlink trees
#327
GoogleCodeExporter
closed
9 years ago
3
add Random local clock model into BEAUti
#326
GoogleCodeExporter
closed
9 years ago
2
processValues[] in DiscreteTraitBranchRateModel should be size of the number of states NOT the number of rates
#325
GoogleCodeExporter
closed
9 years ago
2
"rates" in "svsGeneralSubstitutionModel" should not have relativeTo
#324
GoogleCodeExporter
closed
9 years ago
1
BEAUti: reload xml having alignments with different taxa
#323
GoogleCodeExporter
closed
9 years ago
1
Tracer: stack buttons to save space
#322
GoogleCodeExporter
closed
9 years ago
2
Default priors in BEAUTi still lead to IMPROPER posterior
#321
GoogleCodeExporter
closed
9 years ago
5
BEAUti: need validation of changing tree in data panel after allowing different taxa
#320
GoogleCodeExporter
closed
9 years ago
1
BEAUti:checkbox 'allow different taxa in partitions' should be a message instead
#319
GoogleCodeExporter
closed
9 years ago
1
BEAUti: different set of default prior and operator setting and reloading function
#318
GoogleCodeExporter
opened
9 years ago
1
BEAUti: geo-phylogenetic symmetric + no BSSVS xml not working
#317
GoogleCodeExporter
closed
9 years ago
2
previous XML with "generalSubstitutionModel" is not working
#316
GoogleCodeExporter
closed
9 years ago
2
make alias "svsGeneralSubstitutionModel" of "generalSubstitutionModel"
#315
GoogleCodeExporter
closed
9 years ago
2
Error message for alignments with different taxa to refer to one tree in BEAST & BEAUti
#314
GoogleCodeExporter
closed
9 years ago
1
asking for help about fetal exception: group size should be integer
#313
GoogleCodeExporter
closed
9 years ago
1
BEAST continues to run (inappropriately) when sequence contains invalid character
#312
GoogleCodeExporter
closed
9 years ago
3
BEAUti: prior generator is not picking up the correct value from prior panel
#311
GoogleCodeExporter
closed
9 years ago
1
beast-beagle.jar not include beast.jar and no default main class
#310
GoogleCodeExporter
closed
9 years ago
2
TRACER: Densities estimates are poor
#309
GoogleCodeExporter
opened
9 years ago
1
geoSiteModel.mu prior
#308
GoogleCodeExporter
closed
9 years ago
2
BEAUti: missing .txt in tree log using EBSP
#307
GoogleCodeExporter
closed
9 years ago
1
Add a command line option to add a prefix to all output file names
#306
GoogleCodeExporter
closed
9 years ago
1
BEAST should warn/halt if log files already exist
#305
GoogleCodeExporter
closed
9 years ago
4
BEAUti should support calendar dates
#304
GoogleCodeExporter
closed
9 years ago
2
Drag and drop alignment files into BEAUti
#303
GoogleCodeExporter
closed
9 years ago
1
Importing multiple files at once gives NPE when they have different taxon sets
#302
GoogleCodeExporter
closed
9 years ago
1
Restriction on using GMRF with unlinked trees
#301
GoogleCodeExporter
opened
9 years ago
3
have a single parser 'generalSubstitutionModel' and get rid of 'svsGeneralSubstitutionModel' parser
#300
GoogleCodeExporter
closed
9 years ago
1
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