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Now that we are depending on `ga4gh-common` for `process_schemas.py` which is used in `setup.py`, the install can fail if the common package is not available before install happens (see below). The s…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/labbcb/GA4GHclient
Confirm the following by editi…
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I am testing GA4GH API server and I observed that the server returns `string` type (quoted values) for all attributes, even for attributes that the schemas documentation says other type. For example t…
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Rethink how `pb.py`, `protocol.py` and the `pb2` files relate to each other; there could be a better way to structure things.
Originally filed in https://github.com/dcolligan/ga4gh-schemas/issues/1
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From the ga4gh-dwg-refserver mailing list:
I believe @saupchurch also experienced this problem.
```
On Mon, 2017-01-23 at 17:06 -0800, Neelam Memon wrote:
>
> Thank you for the reply. I am s…
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This PR improves the fidelity of our VCF/variant representation by adding named fields for the filters. This will require interpreting the filters field of the pysam record. Since it doesn't offer any…
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I'm attempting to run gridss on a simulated bam file generated by varsim so that I can assess gridss precision/sensitivity. I'm using the example script gridss.sh (modified with my input bam and refe…
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Right now, we have the `ga4gh_client` and `ga4gh` packages. Eventually all packages should be able to be imported by the following syntax:
`import ga4gh.foo`
Where foo is client, server, schemas, w…
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Docker builds automatically from a hook into github. Upon inspecting it I find that it has been failing since we added the `protoc` requirement.
```
Downloading ga4gh_schemas-0.0.9.tar.gz (2.1MB)
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kozbo updated
7 years ago
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As we go through the hard process of renaming the packaging, we should consider renaming repositories to be more understandable as well. Thanks @dcolligan
https://help.github.com/articles/renaming…