-
@pcingola I've been trying to build a custom data base and get errors. it will not let me create one, i have tried every command for building. please help.
input: java -jar snpEff.jar build -gtf22 -v…
-
* **PTHR ID & PTN node:**
GO:0032995 | regulation of fungal-type cell wall biogenesis | IBA with S000003461 , A0A1D8PE53 , PTN001023483
* **Sequences with problematic annotation (ID + gene/prote…
-
Hi
Thank you so much for releasing this awesome package! I've been able to use all functions/analyses with ease. Now, I am wondering if there is a good way to uncover/test which TF repressors/activ…
-
**Term to be merged: Provide GO ID and term label**
regulation of nucleosome density (GO:0060303)
**Which term do you propose this term merge into? Provide GO ID and term label**
nucleosome…
-
I would only create the biosynthesis term since in general there are no degradation pathways of these metabolites (only few exceptions). The cluster is well characterized as well as its regulation, th…
-
* **InterPro ID / label**
GO:0006355 | regulation of transcription, DNA-templated | IEA with IPR006645
https://www.pombase.org/gene/SPAC23C4.19
is not "regulation" it reassembles the chromati…
-
Hi @jodyphelan,
**We want to add some parameters when calling SNP by freebayes, for example --min-mapping-quality 60.
We have tried the following but failed.**
How do we add parameters at --cal…
-
I would only create the biosynthesis term since in general there are no degradation pathways of these metabolites (only few exceptions). The cluster is well characterized as well as its regulation, th…
-
* **PTHR ID & PTN node:**
GO:2000200 | regulation of ribosomal subunit export from nucleus | IBA with PTN000529705 , S000004096 | Gaudet P et al.
GO:0006364 | rRNA processing | IBA with PTN00052970…
-
**Describe the issue**
A clear and concise description of what the issue is.
**To Reproduce**
1. SnpEff version: 5.1
2. Genome version:
3. SnpEff full command line: snpEff build -gff3 -v Myco…